Browse Element(s) Details


OsAffx.23378.1.S1_at

Description gb:NM_184030.1
DB_XREF= gi:34895187
GEN=B1051E10.34
TID=OsAffx.23378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1051E10.34 (B1051E10.34), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g249205/11WGR domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24870NANA1+13987521..13989505hypothetical protein
LOC_Os01g24880Os.5342.2.S1_x_at10/111+13994996..14001917VIP2 protein, putative, expressed
LOC_Os01g24890NANA1+14003761..14006639transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24900OsAffx.23377.2.S1_at11/111+14008548..14009041hypothetical protein
LOC_Os01g24910OsAffx.7362.1.S1_x_at1/111+14009272..14011314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24920OsAffx.23378.1.S1_at5/111+14013845..14021269WGR domain containing protein, expressed
LOC_Os01g24930OsAffx.11196.1.S1_s_at11/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.2.S1_at3/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.1.S1_at1/111+14025570..14026564hypothetical protein
LOC_Os01g24940Os.24852.1.A1_at10/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940OsAffx.28592.1.S1_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940Os.35524.1.S3_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24950Os.27106.1.S1_at11/111+14042084..14046682Exocyst complex subunit Sec15-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006471biological_processprotein amino acid ADP-ribosylation
GO:0005634cellular_componentnucleus
GO:0003950molecular_functionNAD+ ADP-ribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23378.1.S1_at--22--9791Chr01:14012825..14012849 (25 bp)
TAAGGGTGTGTACGATGCTGTCTCT
NONE
OsAffx.23378.1.S1_at--78--631Chr01:14012839..14012863 (25 bp)
ATGCTGTCTCTTCCTATTTTCCACT
NONE
OsAffx.23378.1.S1_at--91--10371Chr01:14012872..14012896 (25 bp)
TTTTTTATGCTTCTCGAATGACTAA
NONE
OsAffx.23378.1.S1_at--224--7651Chr01:14013794..14013818 (25 bp)
GGGAGCTTGTCCCAAGTCGCCTTAA
NONE
OsAffx.23378.1.S1_at--1105--7231Chr01:14013802..14013826 (25 bp)
GTCCCAAGTCGCCTTAATTTTGATG
NONE
OsAffx.23378.1.S1_at--1044--7231Chr01:14013809..14013833 (25 bp)
GTCGCCTTAATTTTGATGCAGATGA
NONE
OsAffx.23378.1.S1_at--287--2631Chr01:14014288..14014312 (25 bp)
AACCGTGCGGTTGGCCAGGAAGGCG
LOC_Os01g24920
OsAffx.23378.1.S1_at--727--2311Chr01:14014322..14014346 (25 bp)
AAAGAGCCGACGAAACTCCTCCTCG
LOC_Os01g24920
OsAffx.23378.1.S1_at--313--9571Chr01:14014372..14014396 (25 bp)
TCTTCAGTGTGGGACGATAGATCTA
LOC_Os01g24920
OsAffx.23378.1.S1_at--556--5771Chr01:14014384..14014408 (25 bp)
GACGATAGATCTAGCACTGTTCCGA
LOC_Os01g24920
OsAffx.23378.1.S1_at--320--10051Chr01:14014389..14014413 (25 bp)
TAGATCTAGCACTGTTCCGATCAGA
LOC_Os01g24920
Target Sequence 
TAAGGGTGTGTACGATGCTGTCTCTTCCTATTTTCCACTCACTTGGTTTTTTTATGCTTCTCGAATGACTAAAATGATAG
CAGCAGACGGGGAGCTTGTCCCAAGTCGCCTTAATTTTGATGCAGATGATCGGCGGCGAGATGTGGACGGCGGCCGGCAG
GAGGCTTCATCAGCAACGGGACCTGCATGCGATACTTCGCACGGCGCATCGACGCTGCTGCACGCGACCAATCGGTGGAG
GTTTGGACGCACCCGCCGCGCCACCTGGAGACCTCCGCACGCTGTCAGCCTCGCCGCCGCCGGAAACCGTGCGGTTGGCC
AGGAAGGCGACGGCGGAAAAAGAGCCGACGAAACTCCTCCTCGGCGCGGGAGACAGCAGCCGGCGGTTTCTTCAGTGTGG
GACGATAGATCTAGCACTGTTCCGATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis