Browse Element(s) Details


OsAffx.23377.2.S1_at

Description tigr:9629.m02411
TID=OsAffx.23377.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2490011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24860NANA1+13981312..13986602retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24870NANA1+13987521..13989505hypothetical protein
LOC_Os01g24880Os.5342.2.S1_x_at10/111+13994996..14001917VIP2 protein, putative, expressed
LOC_Os01g24890NANA1+14003761..14006639transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24900OsAffx.23377.2.S1_at11/111+14008548..14009041hypothetical protein
LOC_Os01g24910OsAffx.7362.1.S1_x_at1/111+14009272..14011314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24920OsAffx.23378.1.S1_at5/111+14013845..14021269WGR domain containing protein, expressed
LOC_Os01g24930OsAffx.11196.1.S1_s_at11/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.2.S1_at3/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.1.S1_at1/111+14025570..14026564hypothetical protein
LOC_Os01g24940Os.24852.1.A1_at10/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940OsAffx.28592.1.S1_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940Os.35524.1.S3_at1/111+14030423..14041200Poly synthetase 2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23377.2.S1_at--828--61710Chr08:9543551..9543574 (24 bp)
GAGGACGTCTTCGCTCGTGGACGAT
NONE
OsAffx.23377.2.S1_at--676--37937Chr12:17671217..17671241 (25 bp)
CTCGACAACCTCTTCAGTACTATAA
NONE
OsAffx.23377.2.S1_at--377--105334Chr12:7045268..7045292 (25 bp)
TTCAGTACTATAACCCTCAACCATT
NONE
OsAffx.23377.2.S1_at--779--70137Chr12:7045272..7045296 (25 bp)
GTACTATAACCCTCAACCATTGATC
NONE
OsAffx.23377.2.S1_at--1001--26334Chr12:17671247..17671271 (25 bp)
AACCATTGATCCCTCTGGATGTGCA
NONE
OsAffx.23377.2.S1_at--717--42928Chr12:17671258..17671282 (25 bp)
CCTCTGGATGTGCACGATTTCGGAC
NONE
OsAffx.23377.2.S1_at--298--86929Chr12:17671266..17671290 (25 bp)
TGTGCACGATTTCGGACGTAACCCT
NONE
OsAffx.23377.2.S1_at--504--53710Chr10:5665580..5665744 (25 bp)
GACGTAACCCTTCAAAACCGTCATG
NONE
OsAffx.23377.2.S1_at--304--2431Chr01:14008954..14008978 (25 bp)
AAAACCGTCATGTAACGCTCGTATG
LOC_Os01g24900
OsAffx.23377.2.S1_at--668--70539Chr12:17671304..17671328 (25 bp)
GTAACGCTCGTATGACCACATTTGA
NONE
OsAffx.23377.2.S1_at--251--89341Chr12:17671316..17671340 (25 bp)
TGACCACATTTGATGGAGGTACAAT
NONE
Target Sequence 
GAGGACGTCTTCGCTCGTGGACGATGAAAGGCCGATAATGAAGCCGCTCATGGACGACTGCGAGAGAGGGAGAGAGATGG
CGGCGGCGGCTGTGGAGCGGCCGGCAGCGGTGGAGAGGTCGGCGGCGCGGTGGAGGGGCCGGCGGGGTAGCGGTCAGTGG
CAGCGGAGCGGTGGAGCGGCCCTCGTGTCGGGGCACAGCACTCGACAACCTCTTCAGTACTATAACCCTCAACCATTGAT
CCCTCTGGATGTGCACGATTTCGGACGTAACCCTTCAAAACCGTCATGTAACGCTCGTATGACCACATTTGATGGAGGTA
CAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23377.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis