Browse Element(s) Details


Os.27106.1.S1_at

Description gb:AK102963.1
DB_XREF= gi:32988172
TID=Os.27106.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1051E10.38 (B1051E10.38), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115I11, full insert sequence.
FL= gb:AK102963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2495011/11Exocyst complex subunit Sec15-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24920OsAffx.23378.1.S1_at5/111+14013845..14021269WGR domain containing protein, expressed
LOC_Os01g24930OsAffx.11196.1.S1_s_at11/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.2.S1_at3/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.1.S1_at1/111+14025570..14026564hypothetical protein
LOC_Os01g24940Os.24852.1.A1_at10/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940OsAffx.28592.1.S1_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940Os.35524.1.S3_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24950Os.27106.1.S1_at11/111+14042084..14046682Exocyst complex subunit Sec15-like family protein, expressed
LOC_Os01g24960OsAffx.22830.1.S1_at11/111+14050615..14051985dirigent, putative
LOC_Os01g24970OsAffx.11197.1.S1_at11/111+14058802..14059101hypothetical protein
LOC_Os01g24980Os.27188.1.S1_at11/111+14060142..14063181oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g24990OsAffx.23379.1.S1_at11/111+14068315..14069516hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27106.1.S1_at--906--1691Chr01:14044543..14044567 (25 bp)
AGCCAGCTAGAGTTGCTAGTCCTCT
LOC_Os01g24950
Os.27106.1.S1_at--862--1231Chr01:14046136..14046160 (25 bp)
AGTTGCCCACAGTGCAGAGCAAAGA
LOC_Os01g24950
Os.27106.1.S1_at--1155--9791Chr01:14046302..14046326 (25 bp)
TAACTGGGAGGTTCAGTGCTTTTCC
LOC_Os01g24950
Os.27106.1.S1_at--283--1111Chr01:14046316..14046340 (25 bp)
AGTGCTTTTCCCTCCAGATCTGGAG
LOC_Os01g24950
Os.27106.1.S1_at--680--7371Chr01:14046387..14046411 (25 bp)
GTGACTGGCTGGTTTGAGGAACTTA
LOC_Os01g24950
Os.27106.1.S1_at--593--5991Chr01:14046413..14046437 (25 bp)
GAGACTGCCTGGTTGCCATGGTGAA
LOC_Os01g24950
Os.27106.1.S1_at--154--10231Chr01:14046474..14046498 (25 bp)
TATTGCTTAACTACCCATATTCTGT
LOC_Os01g24950
Os.27106.1.S1_at--623--7071Chr01:14046511..14046535 (25 bp)
GTAATCTGTCCATCGATAACTGCTT
LOC_Os01g24950
Os.27106.1.S1_at--251--6291Chr01:14046564..14046588 (25 bp)
GATGTTCTGAAGCTTATCATGTGAA
LOC_Os01g24950
Os.27106.1.S1_at--718--811Chr01:14046607..14046631 (25 bp)
ATGGTCATCAAGTCTCTCCTTAATA
LOC_Os01g24950
Os.27106.1.S1_at--894--6771Chr01:14046655..14046679 (25 bp)
GTTAGTTAAGACCTGCTAGTTATTA
LOC_Os01g24950
Target Sequence 
AGCCAGCTAGAGTTGCTAGTCCTCTCCTCTGCACCAGTTGCCCACAGTGCAGAGCAAAGAAGGGAGAAGAGTAGAACCTG
GAGGAAGAACAAGCAGAGGAGTAAGAAGAGCAGAGCAGGGGAAGAGGACAAAGAGTTAAAGAGAGGCAGATCGGCGCAGG
GGGCAAAGAAGAGAAGAGCAGAGGTGGAGGAGATAAGGAGATAACTGGGAGGTTCAGTGCTTTTCCCTCCAGATCTGGAG
CAGGGAGGGTACGGTGGTCGACGAACGAGGCTGCAGGGGTCCTGTGGTGACTGGCTGGTTTGAGGAACTTAGGAGACTGC
CTGGTTGCCATGGTGAATTGGTGATGCCTTCATAAAATAGATGGTATACTATATATTGCTTAACTACCCATATTCTGTAG
TCTAACAGGGGTAATCTGTCCATCGATAACTGCTTATAGTTATAGACTCATAGGACTGGTGTAGATGTTCTGAAGCTTAT
CATGTGAATTGGGTAATTAACATTGCATGGTCATCAAGTCTCTCCTTAATATTTATTTGGACTAAACAAATTTAGTTAGT
TAAGACCTGCTAGTTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis