Browse Element(s) Details


OsAffx.22830.1.S1_at

Description tigr:9629.m02418
TID=OsAffx.22830.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2496011/11dirigent, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24930OsAffx.11196.1.S1_s_at11/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.2.S1_at3/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.1.S1_at1/111+14025570..14026564hypothetical protein
LOC_Os01g24940Os.24852.1.A1_at10/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940OsAffx.28592.1.S1_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940Os.35524.1.S3_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24950Os.27106.1.S1_at11/111+14042084..14046682Exocyst complex subunit Sec15-like family protein, expressed
LOC_Os01g24960OsAffx.22830.1.S1_at11/111+14050615..14051985dirigent, putative
LOC_Os01g24970OsAffx.11197.1.S1_at11/111+14058802..14059101hypothetical protein
LOC_Os01g24980Os.27188.1.S1_at11/111+14060142..14063181oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g24990OsAffx.23379.1.S1_at11/111+14068315..14069516hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22830.1.S1_at--946--9831Chr01:14051885..14051909 (25 bp)
TAAATGGAAGCCAGCAGGCGCCTCT
LOC_Os01g24960
OsAffx.22830.1.S1_at--1032--10231Chr01:14051856..14051880 (25 bp)
TTTGGTTTAACTGCCATCAGCGATT
LOC_Os01g24960
OsAffx.22830.1.S1_at--552--2031Chr01:14051829..14051853 (25 bp)
ACTATACTCGATGGTCCTGGGCCGA
LOC_Os01g24960
OsAffx.22830.1.S1_at--565--9271Chr01:14051815..14051839 (25 bp)
TCCTGGGCCGAATGCAAGTGTCGTC
LOC_Os01g24960
OsAffx.22830.1.S1_at--142--1031Chr01:14051779..14051803 (25 bp)
AGGTATGCACTTCCAATCAGGTCAT
LOC_Os01g24960
OsAffx.22830.1.S1_at--1065--5471Chr01:14051728..14051752 (25 bp)
GAACTTCTTGTTCGAGGATACCAGG
LOC_Os01g24960
OsAffx.22830.1.S1_at--947--951Chr01:14051500..14051738 (25 bp)
AGGATACCAGGTTCAACGGGTCCAT
LOC_Os01g24960
OsAffx.22830.1.S1_at--751--10511Chr01:14051489..14051513 (25 bp)
TTCAACGGGTCCATGCTTCAGGTGA
LOC_Os01g24960
OsAffx.22830.1.S1_at--163--411Chr01:14051443..14051467 (25 bp)
ATCAGTGGGCTATTCTTGGAGGGAC
LOC_Os01g24960
OsAffx.22830.1.S1_at--205--10691Chr01:14051407..14051431 (25 bp)
TTGCCGCAGAGGGTATTGTCGAACA
LOC_Os01g24960
OsAffx.22830.1.S1_at--1016--8691Chr01:14051391..14051415 (25 bp)
TGTCGAACACAAGATAGTCCAGGTA
LOC_Os01g24960
Target Sequence 
TAAATGGAAGCCAGCAGGCGCCTCTATTTTTTGGTTTAACTGCCATCAGCGATTGGACTATACTCGATGGTCCTGGGCCG
AATGCAAGTGTCGTCGGACGTGCGCAAGGTATGCACTTCCAATCAGGTCATATAAGGGAAAAGTGGTACACATCCATGAA
CTTCTTGTTCGAGGATACCAGGTTCAACGGGTCCATGCTTCAGGTGATGGGGACTACTCCACAAGATGATCAGTGGGCTA
TTCTTGGAGGGACTGGAGAATTTGTTGCCGCAGAGGGTATTGTCGAACACAAGATAGTCCAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis