Browse Element(s) Details


Os.53353.1.S1_at

Description gb:AK072222.1
DB_XREF= gi:32982245
TID=Os.53353.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013165K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013165K20, full insert sequence.
FL= gb:AK072222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2501010/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24980Os.27188.1.S1_at11/111+14060142..14063181oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g24990OsAffx.23379.1.S1_at11/111+14068315..14069516hypothetical protein
LOC_Os01g25000OsAffx.23380.1.S1_at11/111+14080143..14081268hypothetical protein
LOC_Os01g25010Os.53353.1.S1_at10/111+14084475..14090564oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g25020OsAffx.23381.1.S1_at10/111+14096054..14096774hypothetical protein
LOC_Os01g25030OsAffx.23382.1.S1_at11/111+14099479..14100370dirigent, putative
LOC_Os01g25040OsAffx.8372.1.S1_at3/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.8371.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.3354.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25050OsAffx.23383.1.S1_x_at11/111+14110888..14111717hypothetical protein
LOC_Os01g25060OsAffx.484.1.S1_x_at6/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.484.1.S1_at5/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060Os.43636.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.27704.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53353.1.S1_at--325--1091Chr01:14086026..14086050 (25 bp)
AGGGCGCTCTCATCGTCAACGTGGG
LOC_Os01g25010
Os.53353.1.S1_at--252--7651NONE
GGGAGACATTCGTCAGGTCTTCACT
NONE
Os.53353.1.S1_at--544--9631Chr01:14090000..14090023 (24 bp)
TCAGGTCTTCACTAATGGGAGGTAC
LOC_Os01g25010
Os.53353.1.S1_at--906--2411Chr01:14090100..14090124 (25 bp)
AAAACGCCATTGTAGGTCCTCTGAG
LOC_Os01g25010
Os.53353.1.S1_at--115--5011Chr01:14090163..14090187 (25 bp)
GCATGGACCATGACGAACTTCTGAA
LOC_Os01g25010
Os.53353.1.S1_at--408--5791Chr01:14090174..14090198 (25 bp)
GACGAACTTCTGAAGCTCTTCTTCG
LOC_Os01g25010
Os.53353.1.S1_at--771--5371Chr01:14090215..14090239 (25 bp)
GAAGAACTTCTTGAACCCGATAAAG
LOC_Os01g25010
Os.53353.1.S1_at--739--2911Chr01:14090274..14090298 (25 bp)
AAGGAGACTTGCTCTGCTTGCAACA
LOC_Os01g25010
Os.53353.1.S1_at--349--4931Chr01:14090289..14090313 (25 bp)
GCTTGCAACATGTGTCTGTCCAAAA
LOC_Os01g25010
Os.53353.1.S1_at--732--3451Chr01:14090314..14090338 (25 bp)
CAGGACATGTCCTTCACTTTTTTAA
LOC_Os01g25010
Os.53353.1.S1_at--407--6891Chr01:14090385..14090409 (25 bp)
GTATATATCTATTGTCCGAGTTGTT
LOC_Os01g25010
Target Sequence 
AGGGCGCTCTCATCGTCAACGTGGGAGACATTCGTCAGGTCTTCACTAATGGGAGGTACGAGAGCGTCGAGCACCGGGTT
GTTGTGGATGGGAAGAAAGAGCGGCTGTCGATGGCGACCTTCCATTCTCCAAGCAAAAACGCCATTGTAGGTCCTCTGAG
CGAGATGGTGGAGCATGAAGACGATGCTGCTTATACAAGCATGGACCATGACGAACTTCTGAAGCTCTTCTTCGCCAAGA
AGCTGGAGGGGAAGAACTTCTTGAACCCGATAAAGAAGCTGAAGAACAGCGGCTGACCAAAGGAGTGGAAAGGAGACTTG
CTCTGCTTGCAACATGTGTCTGTCCAAAACAGGACATGTCCTTCACTTTTTTAAACACGTAGTTATCAAATTGTTTGAAA
AATTAAATAAGATTTGTACAGTATATATCTATTGTCCGAGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis