Browse Element(s) Details


OsAffx.27704.1.S1_at

Description tigr:9634.m01841
TID=OsAffx.27704.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1909011/11hypothetical protein
LOC_Os10g124802/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g313502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g162101/11hypothetical protein
LOC_Os11g157501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g250601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19050OsAffx.15487.1.S1_at11/116+10830872..10833566embryogenesis transmembrane protein, putative
LOC_Os06g19060OsAffx.27703.1.S1_at9/116+10837974..10839575hypothetical protein
LOC_Os06g19070Os.7674.1.S1_at11/116+10842947..10844982Cytochrome P450 family protein, expressed
LOC_Os06g19080OsAffx.8371.1.S1_at2/116+10848824..10851865transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g19090OsAffx.27704.1.S1_at11/116+10858284..10861584hypothetical protein
LOC_Os06g19100OsAffx.27705.1.S1_at11/116+10867974..10868807hypothetical protein
LOC_Os06g19110OsAffx.27706.1.S1_at11/116+10870985..10874084expressed protein
LOC_Os06g19120OsAffx.15488.1.S1_at11/116+10875629..10876307hypothetical protein
LOC_Os06g19130OsAffx.27709.2.S1_at11/116+10880038..10888582hypothetical protein
LOC_Os06g19130OsAffx.9664.1.S1_at1/116+10880038..10888582hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27704.1.S1_at--77--2635Chr11:8917888..8917907 (20 bp)
AACCGTCGTAGTTCTTGATCCAGCA
LOC_Os11g15750
OsAffx.27704.1.S1_at--504--8453Chr10:6703976..6704000 (25 bp)
TGGCGGGTACGTAAAGAATCCAAGT
LOC_Os10g12480
OsAffx.27704.1.S1_at--154--4931Chr06:10861229..10861253 (25 bp)
GCTTGACGAACCTATGTGATTATTG
LOC_Os06g19090
OsAffx.27704.1.S1_at--354--7411Chr06:10861244..10861268 (25 bp)
GTGATTATTGCGTGTGCGAGATGCC
LOC_Os06g19090
OsAffx.27704.1.S1_at--262--7491Chr06:10861277..10861301 (25 bp)
GTGGGAGATACGAAACTGAGTTTAC
LOC_Os06g19090
OsAffx.27704.1.S1_at--512--1271Chr06:10861390..10861410 (21 bp)
AGATCTCCCGAGCATCACTTATAAC
LOC_Os06g19090
OsAffx.27704.1.S1_at--984--3311Chr06:10861401..10861425 (25 bp)
CACTTATAACGCAAGCCGGTTCGAT
LOC_Os06g19090
OsAffx.27704.1.S1_at--215--5532Chr06:10861428..10861452 (25 bp)
GAAAACGCTTATCAACTTGTGCACG
LOC_Os06g19090
OsAffx.27704.1.S1_at--510--10171Chr06:10861437..10861461 (25 bp)
TATCAACTTGTGCACGGACTTGCGC
LOC_Os06g19090
OsAffx.27704.1.S1_at--360--10831Chr06:10861444..10861468 (25 bp)
TTGTGCACGGACTTGCGCCGGTTCA
LOC_Os06g19090
OsAffx.27704.1.S1_at--360--10711Chr06:10861456..10861480 (25 bp)
TTGCGCCGGTTCATTCATCGCGACA
LOC_Os06g19090
Target Sequence 
AACCGTCGTAGTTCTTGATCCAGCAGACTATGACAAGGACGCGTACATGGAGTTCCTATGCTTCCTGAACTTAGCACACG
GCCGTTATAAGAAACGTGGCGGGTACGTAAAGAATCCAAGTAGAGAGAAACTATACGTAAGGGGACGCTGGCCGTGTTAT
AAGCAACCTAGCTTGACGAACCTATGTGATTATTGCGTGTGCGAGATGCCCAGGGTCAGTGGGAGATACGAAACTGAGTT
TACAGATCTCCCGAGCATCACTTATAACGCAAGCCGGTTCGATCAGAAAACGCTTATCAACTTGTGCACGGACTTGCGCC
GGTTCATTCATCGCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis