Browse Element(s) Details


OsAffx.27703.1.S1_at

Description tigr:9634.m01837
TID=OsAffx.27703.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g190609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19010Os.49938.1.S1_at10/116+10812017..10815112expressed protein
LOC_Os06g19020OsAffx.27702.1.S1_at10/116+10817801..10818535hypothetical protein
LOC_Os06g19030NANA6+10820537..10821565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19040NANA6+10825032..10829372retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19050OsAffx.15487.1.S1_at11/116+10830872..10833566embryogenesis transmembrane protein, putative
LOC_Os06g19060OsAffx.27703.1.S1_at9/116+10837974..10839575hypothetical protein
LOC_Os06g19070Os.7674.1.S1_at11/116+10842947..10844982Cytochrome P450 family protein, expressed
LOC_Os06g19080OsAffx.8371.1.S1_at2/116+10848824..10851865transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g19090OsAffx.27704.1.S1_at11/116+10858284..10861584hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27703.1.S1_at--103--6653Chr09:12143690..12143710 (21 bp)
GTTGTATATAACTAAAATTGCATTT
NONE
OsAffx.27703.1.S1_at--403--71Chr06:10838052..10838127 (25 bp)
ATTGCATTTTGCTATATTACTAAAG
LOC_Os06g19060
OsAffx.27703.1.S1_at--961--10251NONE
TTTGATTTAGCATGTCCCGAATCAG
NONE
OsAffx.27703.1.S1_at--702--10431Chr06:10838151..10838557 (25 bp)
TTAGCATGTCCCGAATCAGTACAAG
LOC_Os06g19060
OsAffx.27703.1.S1_at--664--4991NONE
GCATGTCCCGAATCAGTACAAGATG
NONE
OsAffx.27703.1.S1_at--304--7251Chr06:10838540..10838564 (25 bp)
GTCCCGAATCAGTACAAGATGATGA
LOC_Os06g19060
OsAffx.27703.1.S1_at--22--2451Chr06:10838593..10838617 (25 bp)
AAAATGAAGGCAAAGCAGCTTGACA
LOC_Os06g19060
OsAffx.27703.1.S1_at--293--931Chr06:10838600..10838624 (25 bp)
AGGCAAAGCAGCTTGACAACATCAA
LOC_Os06g19060
OsAffx.27703.1.S1_at--548--5271Chr06:10839046..10839070 (25 bp)
GAATGAAATCACAAGCAGGCACGAA
LOC_Os06g19060
OsAffx.27703.1.S1_at--18--9711Chr06:10839054..10839078 (25 bp)
TCACAAGCAGGCACGAATCAGATTT
LOC_Os06g19060
OsAffx.27703.1.S1_at--612--5011Chr06:10839060..10839084 (25 bp)
GCAGGCACGAATCAGATTTGCAAAT
LOC_Os06g19060
Target Sequence 
GTTGTATATAACTAAAATTGCATTTTGCTATATTACTAAAGTTACATTTGTAAATACATTTGATTTAGCATGTCCCGAAT
CAGTACAAGATGATGATGAAAAGAGACAAGAATCAGAAAAAAGCAAAATGAAGGCAAAGCAGCTTGACAACATCAAGCCT
CAAGGAATGAAATCACAAGCAGGCACGAATCAGATTTGCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis