Browse Element(s) Details


Os.43636.1.S1_at

Description gb:NM_188179.1
DB_XREF= gi:34903441
TID=Os.43636.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43636 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OSJNBa0077F02.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OSJNBa0077F02.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2327010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g124802/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g162101/11hypothetical protein
LOC_Os01g250601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g157501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g313501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23220NANA7+13086472..13091264retrotransposon protein, putative, unclassified
LOC_Os07g23230NANA7+13092773..13094141hypothetical protein
LOC_Os07g23244Os.24393.1.S1_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.28550.1.S1_x_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.5458.1.S1_at1/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23260OsAffx.28551.1.S1_at11/117+13103030..13104247hypothetical protein
LOC_Os07g23270Os.43636.1.S1_at10/117+13113625..13118366transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23280OsAffx.1309.1.S1_at11/117+13120759..13121409transposon protein, putative, unclassified
LOC_Os07g23290OsAffx.8372.1.S1_at4/117+13121748..13125159transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23290OsAffx.8371.1.S1_at3/117+13121748..13125159transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23300NANA7+13130853..13136998retrotransposon protein, putative, unclassified
LOC_Os07g23310Os.28943.1.S1_x_at1/117+13137445..13140667retrotransposon protein, putative, unclassified
LOC_Os07g23320Os.47130.4.A1_x_at1/117+13141603..13141929retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43636.1.S1_at--76--2632Chr08:22183416..22183437 (22 bp)
AACCGTTGTAGTTCTTGATCCGGCG
NONE
Os.43636.1.S1_at--880--8753Chr01:14116267..14116290 (24 bp)
TGTAGTTCTTGATCCGGCGGACTAT
LOC_Os01g25060
Os.43636.1.S1_at--1116--5532Chr11:8918068..8918217 (24 bp)
GAAACGTGGCGGTGTTATAAGCAAC
LOC_Os11g15750
Os.43636.1.S1_at--950--10311Chr07:13115422..13115446 (25 bp)
TTTACGAACCTATGCGATTATTACG
LOC_Os07g23270
Os.43636.1.S1_at--511--1272Chr10:6704283..6704303 (21 bp)
AGATCTCCCGAGTATCCCTTATAGT
LOC_Os10g12480
Os.43636.1.S1_at--491--6892Chr10:6704290..6704359 (25 bp)
GTATCCCTTATAGTGCAAGCCGGTT
LOC_Os10g12480
Os.43636.1.S1_at--8--4191Chr07:13115253..13115277 (25 bp)
CCCTTATAGTGCAAGCCGGTTCGAT
LOC_Os07g23270
Os.43636.1.S1_at--529--5531Chr07:13115226..13115250 (25 bp)
GAAAACACTTATCAACTTGTGCGTG
LOC_Os07g23270
Os.43636.1.S1_at--1034--371Chr07:13115216..13115240 (25 bp)
ATCAACTTGTGCGTGGACTTGTGCC
LOC_Os07g23270
Os.43636.1.S1_at--736--9091Chr07:13115207..13115231 (25 bp)
TGCGTGGACTTGTGCCGGTTCATTC
LOC_Os07g23270
Os.43636.1.S1_at--126--10811Chr07:13115198..13115222 (25 bp)
TTGTGCCGGTTCATTCGCCGCGACA
LOC_Os07g23270
Target Sequence 
AACCGTTGTAGTTCTTGATCCGGCGGACTATGACAAGGACGCGTACATGGAGTTCCTATGCTTGCTGAACTTAGCACACG
GCCGTTATAAGAAACGTGGCGGTGTTATAAGCAACCTAGCTTTACGAACCTATGCGATTATTACGTGTGCGAGATGCTCA
GGGTCAATGGGAGATACAATTGAGTTTACAGATCTCCCGAGTATCCCTTATAGTGCAAGCCGGTTCGATCAGAAAACACT
TATCAACTTGTGCGTGGACTTGTGCCGGTTCATTCGCCGCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis