Browse Element(s) Details


OsAffx.1309.1.S1_at

Description gb:NM_188181.1
DB_XREF= gi:34903445
TID=OsAffx.1309.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OSJNBa0077F02.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2328011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23244Os.24393.1.S1_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.28550.1.S1_x_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.5458.1.S1_at1/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23260OsAffx.28551.1.S1_at11/117+13103030..13104247hypothetical protein
LOC_Os07g23270Os.43636.1.S1_at10/117+13113625..13118366transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23280OsAffx.1309.1.S1_at11/117+13120759..13121409transposon protein, putative, unclassified
LOC_Os07g23290OsAffx.8372.1.S1_at4/117+13121748..13125159transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23290OsAffx.8371.1.S1_at3/117+13121748..13125159transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23300NANA7+13130853..13136998retrotransposon protein, putative, unclassified
LOC_Os07g23310Os.28943.1.S1_x_at1/117+13137445..13140667retrotransposon protein, putative, unclassified
LOC_Os07g23320Os.47130.4.A1_x_at1/117+13141603..13141929retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1309.1.S1_at--499--4471Chr07:13120835..13120859 (25 bp)
GCCGGCGGCTTGACGTTGCTCCTAA
LOC_Os07g23280
OsAffx.1309.1.S1_at--760--4251Chr07:13120836..13120860 (25 bp)
CCGGCGGCTTGACGTTGCTCCTAAC
LOC_Os07g23280
OsAffx.1309.1.S1_at--862--3931Chr07:13120837..13120861 (25 bp)
CGGCGGCTTGACGTTGCTCCTAACG
LOC_Os07g23280
OsAffx.1309.1.S1_at--923--8351Chr07:13120838..13120862 (25 bp)
GGCGGCTTGACGTTGCTCCTAACGC
LOC_Os07g23280
OsAffx.1309.1.S1_at--919--4691Chr07:13120839..13120863 (25 bp)
GCGGCTTGACGTTGCTCCTAACGCC
LOC_Os07g23280
OsAffx.1309.1.S1_at--721--8271Chr07:13120841..13120865 (25 bp)
GGCTTGACGTTGCTCCTAACGCCGG
LOC_Os07g23280
OsAffx.1309.1.S1_at--539--4911Chr07:13120842..13120866 (25 bp)
GCTTGACGTTGCTCCTAACGCCGGC
LOC_Os07g23280
OsAffx.1309.1.S1_at--425--3631Chr07:13120843..13120867 (25 bp)
CTTGACGTTGCTCCTAACGCCGGCG
LOC_Os07g23280
OsAffx.1309.1.S1_at--548--10751Chr07:13120844..13120868 (25 bp)
TTGACGTTGCTCCTAACGCCGGCGT
LOC_Os07g23280
OsAffx.1309.1.S1_at--605--8931Chr07:13120845..13120869 (25 bp)
TGACGTTGCTCCTAACGCCGGCGTT
LOC_Os07g23280
OsAffx.1309.1.S1_at--867--6111Chr07:13121020..13121044 (25 bp)
GAGGTTGAAAAGAGGCGGCGACAAG
LOC_Os07g23280
Target Sequence 
GCCGGCGGCTTGACGTTGCTCCTAACGCCGGCGTTGGTCTTGAAGGCGTGGAGAAGAGGCCGGCGGCGACCCGGATCTGG
CCGGCGGTGGAGGAGGCAGTGGCGGCGTCGGTGGAGACCGGGGAGGAGGCCTCGGCGGCGGAGGCCGGTCGGTGTGGACG
ACGAGAAGACGGCGGCGGCGACGGCGAGGTTGAAAAGAGGCGGCGACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis