Browse Element(s) Details


OsAffx.17852.2.S1_at

Description tigr:9631.m04138
TID=OsAffx.17852.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4296011/11hypothetical protein
LOC_Os12g052202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42900Os.13727.1.S1_at11/113+23879913..23888496KH domain containing protein, expressed
LOC_Os03g42910OsAffx.25504.1.S1_at11/113+23891739..23892293hypothetical protein
LOC_Os03g42920OsAffx.25505.1.S1_x_at11/113+23892619..23893119hypothetical protein
LOC_Os03g42930OsAffx.24317.2.S1_x_at7/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.24317.5.S1_x_at2/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.30665.1.A1_x_at1/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.23379.1.S1_at1/113+23894330..23897354hypothetical protein
LOC_Os03g42950NANA3+23901335..23904789retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g42954OsAffx.27728.1.S1_at1/113+23908379..23909164hypothetical protein
LOC_Os03g42960OsAffx.17852.2.S1_at11/113+23912119..23915380hypothetical protein
LOC_Os03g42960OsAffx.17852.1.S1_at2/113+23912119..23915380hypothetical protein
LOC_Os03g42970OsAffx.24317.6.S1_x_at5/113+23917258..23920108transposon protein, putative, unclassified
LOC_Os03g42990NANA3+23931862..23932581hypothetical protein
LOC_Os03g43000NANA3+23935836..23936075expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17852.2.S1_at--482--7951Chr03:23914072..23914096 (25 bp)
GGATAAGATTCACTTGCCTAGCAAA
LOC_Os03g42960
OsAffx.17852.2.S1_at--695--991Chr03:23914844..23914868 (25 bp)
AGGTTGCCTTCCATCTGGACTAAAA
LOC_Os03g42960
OsAffx.17852.2.S1_at--611--6671Chr03:23914898..23914983 (25 bp)
GTTGCTCAGATTCAAGGTATCACAT
LOC_Os03g42960
OsAffx.17852.2.S1_at--87--2091Chr03:23914980..23915004 (25 bp)
ACATATCATTGTTGTCGCCTGTGAA
LOC_Os03g42960
OsAffx.17852.2.S1_at--6--7371Chr03:23915000..23915024 (25 bp)
GTGAAAAATGTCTTGATCTGGCTCT
LOC_Os03g42960
OsAffx.17852.2.S1_at--416--5391Chr03:23915127..23915149 (23 bp)
GAAGCACAATCAGCACTTTGAGCAG
LOC_Os03g42960
OsAffx.17852.2.S1_at--265--8911Chr03:23915143..23915167 (25 bp)
TGAGCAGAATGAGCCGCACAGCAAC
LOC_Os03g42960
OsAffx.17852.2.S1_at--198--2151Chr03:23915166..23915190 (25 bp)
ACAGCATCTATTTAAGCAGCAGCAG
LOC_Os03g42960
OsAffx.17852.2.S1_at--169--4951Chr03:23915251..23915275 (25 bp)
GCATTCCAGTTTGAGCAGCGGCATT
LOC_Os03g42960
OsAffx.17852.2.S1_at--312--10494Chr03:23915274..23915298 (25 bp)
TTACAGTTCAGTTTCATTCCAGCAA
LOC_Os03g42960
OsAffx.17852.2.S1_at--283--1514Chr03:23915300..23915324 (25 bp)
AGCAGCTCAGTTTCATTCCAGCAAC
LOC_Os03g42960
Target Sequence 
GGATAAGATTCACTTGCCTAGCAAAAAGGGCAGGTTGCCTTCCATCTGGACTAAAAATGTTGCCACTAAAAATATTGCCA
ATGAAGTTGCTCAGATTCAAGGTATCACATATCATTGTTGTCGCCTGTGAAAAATGTCTTGATCTGGCTCTTAAATATGT
TGAGTGCTGTTTGAAGCACAATCAGCACTTTGAGCAGAATGAGCCGCACAGCAACAGCATCTATTTAAGCAGCAGCAGTA
CAGTTTTAGCAGCAGCAATTTCAGCAGCAACAGCAGTACAGTTTCAGCAGCAGCAGCAGCATTCCAGTTTGAGCAGCGGC
ATTACAGTTCAGTTTCATTCCAGCAACAGCAGCTCAGTTTCATTCCAGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17852.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis