Browse Element(s) Details


Os.18818.1.S1_a_at

Description gb:AK061638.1
DB_XREF= gi:32971656
TID=Os.18818.1
CNT=46
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.18818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0452F10.4 (P0452F10.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A12, full insert sequence.
FL= gb:AK068523.1 gb:AK061638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1271011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12690Os.51763.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12690Os.7995.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12700OsAffx.15054.1.S1_x_at5/111+7011933..7015181Myb-like DNA-binding domain containing protein
LOC_Os01g12710Os.18818.1.S1_a_at11/111+7021099..7027411oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g12720Os.32687.1.S1_at11/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12720Os.31630.1.S1_x_at1/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12730Os.11710.1.S1_at11/111+7040738..7044358Ras-related protein Rab7, putative, expressed
LOC_Os01g12740Os.30664.1.S1_at11/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12740Os.45887.2.S1_x_at1/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.2.S1_x_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.1.S1_at11/111+7049902..7053175Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0004316molecular_function3-oxoacyl-[acyl-carrier protein] reductase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18818.1.S1_a_at--903--9331Chr01:7025357..7025381 (25 bp)
TCGCCGAGGCCGATGGTTTGATGAA
LOC_Os01g12710
Os.18818.1.S1_a_at--252--3411Chr01:7026690..7026714 (25 bp)
CAGCAGAGGCTGATAGAATCCGTAA
LOC_Os01g12710
Os.18818.1.S1_a_at--845--6491Chr01:7026701..7026725 (25 bp)
GATAGAATCCGTAATTGGGCTGAAA
LOC_Os01g12710
Os.18818.1.S1_a_at--651--8631Chr01:7026716..7026740 (25 bp)
TGGGCTGAAAGTCGAGCACGCTTCT
LOC_Os01g12710
Os.18818.1.S1_a_at--583--9371Chr01:7026727..7026751 (25 bp)
TCGAGCACGCTTCTCTTTCACAGAT
LOC_Os01g12710
Os.18818.1.S1_a_at--158--4431Chr01:7026752..7026776 (25 bp)
GCCATGGAGATGTACACAGAAAACA
LOC_Os01g12710
Os.18818.1.S1_a_at--437--2191Chr01:7026774..7026798 (25 bp)
ACACATGGGTTTCTGTGTTCTCGCT
LOC_Os01g12710
Os.18818.1.S1_a_at--763--3491Chr01:7026777..7026801 (25 bp)
CATGGGTTTCTGTGTTCTCGCTCTC
LOC_Os01g12710
Os.18818.1.S1_a_at--698--9511Chr01:7026798..7026822 (25 bp)
TCTCTGTCGTCTGCGCATTCATAAT
LOC_Os01g12710
Os.18818.1.S1_a_at--682--7171Chr01:7026806..7026830 (25 bp)
GTCTGCGCATTCATAATTCTTTCCA
LOC_Os01g12710
Os.18818.1.S1_a_at--780--4571Chr01:7026810..7026834 (25 bp)
GCGCATTCATAATTCTTTCCAGCTC
LOC_Os01g12710
Target Sequence 
TCGCCGAGGCCGATGGTTTGATGAAGAGGGAAGAGCAGTATATGCAGCAGAGGCTGATAGAATCCGTAATTGGGCTGAAA
GTCGAGCACGCTTCTCTTTCACAGATGCCATGGAGATGTACACAGAAAACACATGGGTTTCTGTGTTCTCGCTCTCTGTC
GTCTGCGCATTCATAATTCTTTCCAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18818.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis