Browse Element(s) Details


Os.32687.1.S1_at

Description gb:AK103247.1
DB_XREF= gi:32988456
TID=Os.32687.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor protein kinase PERK1 (P0452F10.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123K23, full insert sequence.
FL= gb:AK103247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1272011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12700OsAffx.15054.1.S1_x_at5/111+7011933..7015181Myb-like DNA-binding domain containing protein
LOC_Os01g12710Os.18818.1.S1_a_at11/111+7021099..7027411oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g12720Os.32687.1.S1_at11/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12720Os.31630.1.S1_x_at1/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12730Os.11710.1.S1_at11/111+7040738..7044358Ras-related protein Rab7, putative, expressed
LOC_Os01g12740Os.30664.1.S1_at11/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12740Os.45887.2.S1_x_at1/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.2.S1_x_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.1.S1_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12760Os.43417.1.S1_at11/111+7058146..7061993Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32687.1.S1_at--1033--1031Chr01:7039223..7039247 (25 bp)
AGGTGTTCGTCCTGGCCATAGCCGA
LOC_Os01g12720
Os.32687.1.S1_at--736--8411Chr01:7039236..7039260 (25 bp)
GGCCATAGCCGATTCTTGGGATCAT
LOC_Os01g12720
Os.32687.1.S1_at--20--9951Chr01:7039275..7039299 (25 bp)
TACGACACGGGCCATTACAATGAAG
LOC_Os01g12720
Os.32687.1.S1_at--722--6231Chr01:7039319..7039343 (25 bp)
GATGGCATTTGGCAGTGGCAATCTA
LOC_Os01g12720
Os.32687.1.S1_at--175--7251Chr01:7039377..7039401 (25 bp)
GTCCCGAATCGATCCGTATCAATGG
LOC_Os01g12720
Os.32687.1.S1_at--66--7651Chr01:7039402..7039426 (25 bp)
GGGATGCGCGTCAAATACCGGAGAC
LOC_Os01g12720
Os.32687.1.S1_at--232--5991Chr01:7039477..7039501 (25 bp)
GAGACAGCCAAGCTTCATGAGATAA
LOC_Os01g12720
Os.32687.1.S1_at--835--951Chr01:7039523..7039547 (25 bp)
AGGACATTGCAACTACCGTAGCTTG
LOC_Os01g12720
Os.32687.1.S1_at--695--6951Chr01:7039540..7039564 (25 bp)
GTAGCTTGTAAAGTCCCAGCCTTAG
LOC_Os01g12720
Os.32687.1.S1_at--1041--5211Chr01:7039677..7039701 (25 bp)
GAATTTTTCCTGTGCACCTTTCTGA
LOC_Os01g12720
Os.32687.1.S1_at--565--3371Chr01:7039691..7039715 (25 bp)
CACCTTTCTGATCTGCATTACGTTT
LOC_Os01g12720
Target Sequence 
AGGTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGGGCCATTACAATGAAGACC
TGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCG
AATCGATCCGTATCAATGGGGGATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGA
CAGCAATGGCACCAGAGACAGCCAAGCTTCATGAGATAANNCCTCATNTTNCTTGTTTTTTTAGGACATTGCAACTACCG
TAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTGCTGACATTGTTTGCAACGAACCGAAATTGTTTGGTT
GAGATATATATAGTTCGAGAGTTCTCGGTAGNTGCAATTCACTGCTTCTTTTCNCTGAATTTTTCCTGTGCACCTTTCTG
ATCTGCATTACGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis