Browse Element(s) Details


Os.43417.1.S1_at

Description gb:NM_188579.1
DB_XREF= gi:34904241
GEN=P0452F10.9
TID=Os.43417.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43417 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cytochrome P-450LXXIA1 (cyp71A1) family (P0452F10.9), mRNA.
PROD=putative cytochrome P-450LXXIA1 (cyp71A1)family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1276011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12720Os.32687.1.S1_at11/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12720Os.31630.1.S1_x_at1/111+7034905..7039727protein kinase, putative, expressed
LOC_Os01g12730Os.11710.1.S1_at11/111+7040738..7044358Ras-related protein Rab7, putative, expressed
LOC_Os01g12740Os.30664.1.S1_at11/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12740Os.45887.2.S1_x_at1/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.2.S1_x_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.1.S1_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12760Os.43417.1.S1_at11/111+7058146..7061993Cytochrome P450 family protein, expressed
LOC_Os01g12770Os.43415.1.A1_at10/111+7068310..7070565Cytochrome P450 family protein, expressed
LOC_Os01g12780OsAffx.23219.1.S1_at8/111+7073073..7073579hypothetical protein
LOC_Os01g12790OsAffx.22085.1.S1_at11/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12790Os.27098.3.S1_x_at7/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12800Os.37011.1.S1_at11/111+7082675..7085992Mpv17/PMP22 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43417.1.S1_at--1044--6051Chr01:7061421..7061445 (25 bp)
GAGTTGATCACCCATCCGGATGCAA
LOC_Os01g12760
Os.43417.1.S1_at--81--971Chr01:7061503..7061527 (25 bp)
AGGACCACTTGGACAGGCTACCTTA
LOC_Os01g12760
Os.43417.1.S1_at--959--7011Chr01:7061538..7061562 (25 bp)
GTACTTAAGGAAACGCTCCGGCTGC
LOC_Os01g12760
Os.43417.1.S1_at--303--10831Chr01:7061581..7061605 (25 bp)
TTGTGCCACATGAACCGTCGTCAGA
LOC_Os01g12760
Os.43417.1.S1_at--203--2811Chr01:7061610..7061634 (25 bp)
AAGATCCTGGGCTATAGCATCCCGG
LOC_Os01g12760
Os.43417.1.S1_at--252--551Chr01:7061628..7061652 (25 bp)
ATCCCGGCATGCACTCGAATAGTGA
LOC_Os01g12760
Os.43417.1.S1_at--227--1111Chr01:7061648..7061672 (25 bp)
AGTGATCAACGCGTGGACTATCGGC
LOC_Os01g12760
Os.43417.1.S1_at--1125--7311Chr01:7061763..7061787 (25 bp)
GTGCTAGTGCCATTTGGTGCCGGTA
LOC_Os01g12760
Os.43417.1.S1_at--804--9431Chr01:7061806..7061830 (25 bp)
TCGGGTTCGCTGTGCAAGCCATGGA
LOC_Os01g12760
Os.43417.1.S1_at--331--5891Chr01:7061891..7061915 (25 bp)
GAGCGAGTTTGGGACTTCATCACTA
LOC_Os01g12760
Os.43417.1.S1_at--1077--651Chr01:7061928..7061952 (25 bp)
ATGAATGGGCTTTCAGTCCGTCTCA
LOC_Os01g12760
Target Sequence 
GAGTTGATCACCCATCCGGATGCAATGCGCAACGCGCAGGACGAGATCAAGGCGGTCGTCGGCATCACCAGCCACATCAC
CGAGGACCACTTGGACAGGCTACCTTACCTCAAGGCTGTACTTAAGGAAACGCTCCGGCTGCACCCGCCGCTCCCACTAC
TTGTGCCACATGAACCGTCGTCAGATACCAAGATCCTGGGCTATAGCATCCCGGCATGCACTCGAATAGTGATCAACGCG
TGGACTATCGGCCGTGACCAGGCGACATGGGGAGAGCATGCGGAGGAGTTCATACCTGAGAGATTCCTGGAGAGTGGCTT
GGACTACATAGGGCAAGACTTTGTGCTAGTGCCATTTGGTGCCGGTAGGAGGGGGTGTCCTGGGGTCGGGTTCGCTGTGC
AAGCCATGGAGATGGCATTGGCGAGCTTGCTGTACAATTTTGACTGGGAGACGAGAGTGGTGGATAGGAGGAGCGAGTTT
GGGACTTCATCACTAGACATGAGTGAGATGAATGGGCTTTCAGTCCGTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis