Browse Element(s) Details


Os.37011.1.S1_at

Description gb:AK061358.1
DB_XREF= gi:32971376
TID=Os.37011.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37011 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0452F10.16 (P0452F10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-B09, full insert sequence.
FL= gb:AK061358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1280011/11Mpv17/PMP22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12760Os.43417.1.S1_at11/111+7058146..7061993Cytochrome P450 family protein, expressed
LOC_Os01g12770Os.43415.1.A1_at10/111+7068310..7070565Cytochrome P450 family protein, expressed
LOC_Os01g12780OsAffx.23219.1.S1_at8/111+7073073..7073579hypothetical protein
LOC_Os01g12790OsAffx.22085.1.S1_at11/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12790Os.27098.3.S1_x_at7/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12800Os.37011.1.S1_at11/111+7082675..7085992Mpv17/PMP22 family protein, expressed
LOC_Os01g12810Os.17393.1.S1_at11/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12810Os.34746.2.S1_at1/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12820Os.9704.1.S1_at10/111+7092409..7094190Harpin-induced protein 1 containing protein, expressed
LOC_Os01g12830Os.49556.1.S1_at11/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12830OsAffx.23220.1.S1_x_at10/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12840Os.23620.1.A1_a_at11/111+7101075..7105897expressed protein
LOC_Os01g12840Os.23620.1.A2_at7/111+7101075..7105897expressed protein
LOC_Os01g12850OsAffx.11022.1.S1_at11/111+7107955..7108242hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37011.1.S1_at--78--2331Chr01:7083250..7083274 (25 bp)
AAAGTTGCTGCGGATGGTCTCCTAT
LOC_Os01g12800
Os.37011.1.S1_at--640--1191Chr01:7083218..7083242 (25 bp)
AGTAGATCTTCTCTTGTTCTTCTCA
LOC_Os01g12800
Os.37011.1.S1_at--885--6731Chr01:7083203..7083227 (25 bp)
GTTCTTCTCATATGTTGGTCTTGCA
LOC_Os01g12800
Os.37011.1.S1_at--858--5351Chr01:7083143..7083167 (25 bp)
GAAGAGGGACTTCATTCCTGCTCTA
LOC_Os01g12800
Os.37011.1.S1_at--623--5131Chr01:7083089..7083113 (25 bp)
GCAAATCGCAAATTTCCGCTTCATT
LOC_Os01g12800
Os.37011.1.S1_at--369--9151Chr01:7083060..7083084 (25 bp)
TGCGATATCAGCTCCTTTACGTGAA
LOC_Os01g12800
Os.37011.1.S1_at--1060--2131Chr01:7083018..7083042 (25 bp)
ACAGTTGCTTCTTGTCGTGGATCGA
LOC_Os01g12800
Os.37011.1.S1_at--849--10771Chr01:7082921..7082945 (25 bp)
TTGATGTGGATCAGGCACGGTCCTT
LOC_Os01g12800
Os.37011.1.S1_at--244--1931Chr01:7082905..7082929 (25 bp)
ACGGTCCTTTTGACATGGTCCTGGA
LOC_Os01g12800
Os.37011.1.S1_at--1102--8711Chr01:7082836..7082860 (25 bp)
TGTCTTCTGTCATTTGGATCAACCT
LOC_Os01g12800
Os.37011.1.S1_at--667--6451Chr01:7082820..7082844 (25 bp)
GATCAACCTTTGTATGCTTTGGCTG
LOC_Os01g12800
Target Sequence 
AAAGTTGCTGCGGATGGTCTCCTATTTGGACCAGTAGATCTTCTCTTGTTCTTCTCATATGTTGGTCTTGCATCAGGAAG
GAGTGTAGAGCAGGTGAAGGATGATGTGAAGAGGGACTTCATTCCTGCTCTAGTTCTAGGGGGAACCATCTGGCCAGCCG
TGCAAATCGCAAATTTCCGCTTCATTCCTGTGCGATATCAGCTCCTTTACGTGAACCTGTTCTGCCTCTTAGACAGTTGC
TTCTTGTCGTGGATCGATCAACAAGGAGATGCACCTTGGAAGCAATGGTTCACATCATTCCAGAAAATCGAAGGCCAGAA
GGGCAAGGTTTGATGTGGATCAGGCACGGTCCTTTTGACATGGTCCTGGATCCAGTAACATCACCCGGCAAAACACCGGG
CATCCCAGAAAATTTGTCTTCTGTCATTTGGATCAACCTTTGTATGCTTTGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis