Browse Element(s) Details


Os.49556.1.S1_at

Description gb:AK101390.1
DB_XREF= gi:32986599
TID=Os.49556.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036K01, full insert sequence.
FL= gb:AK101390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1283011/11D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12780OsAffx.23219.1.S1_at8/111+7073073..7073579hypothetical protein
LOC_Os01g12790OsAffx.22085.1.S1_at11/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12790Os.27098.3.S1_x_at7/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12800Os.37011.1.S1_at11/111+7082675..7085992Mpv17/PMP22 family protein, expressed
LOC_Os01g12810Os.17393.1.S1_at11/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12810Os.34746.2.S1_at1/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12820Os.9704.1.S1_at10/111+7092409..7094190Harpin-induced protein 1 containing protein, expressed
LOC_Os01g12830Os.49556.1.S1_at11/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12830OsAffx.23220.1.S1_x_at10/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12840Os.23620.1.A1_a_at11/111+7101075..7105897expressed protein
LOC_Os01g12840Os.23620.1.A2_at7/111+7101075..7105897expressed protein
LOC_Os01g12850OsAffx.11022.1.S1_at11/111+7107955..7108242hypothetical protein
LOC_Os01g12860Os.22373.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860OsAffx.27908.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23748.1.A1_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23747.1.S1_s_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12870Os.12062.2.S1_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12870Os.12062.1.S1_a_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49556.1.S1_at--350--7611Chr01:7098040..7098064 (25 bp)
GGGCAATGGCTGATCTAGTTCTACA
LOC_Os01g12830
Os.49556.1.S1_at--352--9071Chr01:7098000..7098024 (25 bp)
TGCATTGAATCAGCCTTTACTCACT
LOC_Os01g12830
Os.49556.1.S1_at--1086--10331Chr01:7097985..7098009 (25 bp)
TTTACTCACTCCAGTCATCTGATTG
LOC_Os01g12830
Os.49556.1.S1_at--777--3451Chr01:7097974..7097998 (25 bp)
CAGTCATCTGATTGTTTCTGTTAGA
LOC_Os01g12830
Os.49556.1.S1_at--1124--8631Chr01:7097945..7097969 (25 bp)
TGGGATGATTGTGCCACCACTACTA
LOC_Os01g12830
Os.49556.1.S1_at--357--1711Chr01:7097930..7097954 (25 bp)
ACCACTACTACATTCTGTAATCCCA
LOC_Os01g12830
Os.49556.1.S1_at--650--531Chr01:7097911..7097935 (25 bp)
ATCCCAATTAGTTTTCTATCTTCTG
LOC_Os01g12830
Os.49556.1.S1_at--1009--1211Chr01:7097880..7097904 (25 bp)
AGTTCTTCATTTTACCCATCATTAG
LOC_Os01g12830
Os.49556.1.S1_at--191--7631Chr01:7097856..7097880 (25 bp)
GGGACATATGCCACTCTTTTGTAAG
LOC_Os01g12830
Os.49556.1.S1_at--317--1411Chr01:7097833..7097857 (25 bp)
AGACATCATTTTATCGGCCTTATGG
LOC_Os01g12830
Os.49556.1.S1_at--228--3931Chr01:7097819..7097843 (25 bp)
CGGCCTTATGGCTGTCATTCAATCA
LOC_Os01g12830
Target Sequence 
GGGCAATGGCTGATCTAGTTCTACAAAATTTAGAGGCACATGCATTGAATCAGCCTTTACTCACTCCAGTCATCTGATTG
TTTCTGTTAGAAGTCTGGGATGATTGTGCCACCACTACTACATTCTGTAATCCCAATTAGTTTTCTATCTTCTGTTTATT
AGTTCTTCATTTTACCCATCATTAGGGACATATGCCACTCTTTTGTAAGACATCATTTTATCGGCCTTATGGCTGTCATT
CAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis