Browse Element(s) Details


Os.9704.1.S1_at

Description gb:AK119627.1
DB_XREF= gi:37989250
TID=Os.9704.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0452F10.18 (P0452F10.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E07, full insert sequence.
FL= gb:AK119627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1282010/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12770Os.43415.1.A1_at10/111+7068310..7070565Cytochrome P450 family protein, expressed
LOC_Os01g12780OsAffx.23219.1.S1_at8/111+7073073..7073579hypothetical protein
LOC_Os01g12790OsAffx.22085.1.S1_at11/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12790Os.27098.3.S1_x_at7/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12800Os.37011.1.S1_at11/111+7082675..7085992Mpv17/PMP22 family protein, expressed
LOC_Os01g12810Os.17393.1.S1_at11/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12810Os.34746.2.S1_at1/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12820Os.9704.1.S1_at10/111+7092409..7094190Harpin-induced protein 1 containing protein, expressed
LOC_Os01g12830Os.49556.1.S1_at11/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12830OsAffx.23220.1.S1_x_at10/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12840Os.23620.1.A1_a_at11/111+7101075..7105897expressed protein
LOC_Os01g12840Os.23620.1.A2_at7/111+7101075..7105897expressed protein
LOC_Os01g12850OsAffx.11022.1.S1_at11/111+7107955..7108242hypothetical protein
LOC_Os01g12860Os.22373.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860OsAffx.27908.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23748.1.A1_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23747.1.S1_s_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9704.1.S1_at--318--4291Chr01:7092969..7092993 (25 bp)
CCTCGGCGATCGTTCATGGCGAGAA
LOC_Os01g12820
Os.9704.1.S1_at--1041--4711Chr01:7092928..7092952 (25 bp)
GCTGGAGAAACATTCGCCTTGTCGA
LOC_Os01g12820
Os.9704.1.S1_at--996--8691Chr01:7092890..7092914 (25 bp)
TGTGCCACTGACTCTAGACTTGGTG
LOC_Os01g12820
Os.9704.1.S1_at--1006--5571Chr01:7092806..7092830 (25 bp)
GAAATGCCCGGTGGTTATCGATTCC
LOC_Os01g12820
Os.9704.1.S1_at--160--8591Chr01:7092795..7092819 (25 bp)
TGGTTATCGATTCCGGTAGCTCCAA
LOC_Os01g12820
Os.9704.1.S1_at--599--4531Chr01:7092777..7092801 (25 bp)
GCTCCAAGCCGATTAGGTTTATCCA
LOC_Os01g12820
Os.9704.1.S1_at--1118--571Chr01:7092757..7092781 (25 bp)
ATCCAGAGTGCTTGTAGTTACACCT
LOC_Os01g12820
Os.9704.1.S1_at--1019--1211Chr01:7092742..7092766 (25 bp)
AGTTACACCTGATGCAGTGCCTTGG
LOC_Os01g12820
Os.9704.1.S1_at--1111--2871Chr01:7092700..7092724 (25 bp)
AAGGGCTGTGATCATGTACTCCCTC
LOC_Os01g12820
Os.9704.1.S1_at--829--1031Chr01:7092441..7092460 (20 bp)
AGGTCCTTCATGACATGAGCCCACA
LOC_Os01g12820
Os.9704.1.S1_at--920--5871NONE
GAGCCCACAGAAAATAAGCCGTAGT
NONE
Target Sequence 
CCTCGGCGATCGTTCATGGCGAGAANGATCCCTCTCTATGGAGCTGGAGAAACATTCGCCTTGTCGAATGCTGGAGGTGC
TGTGCCACTGACTCTAGACTTGGTGGTAAGAGCTAGAGGGTATGTGATTGGTAAGCTTGTGAGGGTGACACACACAAAGC
GTGTGAAATGCCCGGTGGTTATCGATTCCGGTAGCTCCAAGCCGATTAGGTTTATCCAGAGTGCTTGTAGTTACACCTGA
TGCAGTGCCTTGGCCTTCTATAATCTCNATAAGGGCTGTGATCATGTACTCCCTCCGTNTCATAATATAAGGGATTTTAA
GTTTTTGCTTGTAACGTTTGACCCACTCGTCTTATTCAAATTTTTTTGAAATTATTAATTATTTTATTTGTGACTTACTT
TATTATCTAAAATACTTTAAGCATAACTTTTCATTTTTTATATTTGCAAAAAAAATTTGAATAAGACTAGTGGTCAAACG
TTACATGTAAAAAATCAAAATACCTTATATTGTGGGACAGAGGGAGTAGATATTTAGGTCCTTCATGACATGAGCCCACA
GAAAATAAGCCGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis