Browse Element(s) Details


Os.23620.1.A1_a_at

Description gb:AK058920.1
DB_XREF= gi:32968938
TID=Os.23620.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0452F10.20 (P0452F10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-B09, full insert sequence.
FL= gb:AK058920.1 gb:AK065657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1284011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12790OsAffx.22085.1.S1_at11/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12790Os.27098.3.S1_x_at7/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12800Os.37011.1.S1_at11/111+7082675..7085992Mpv17/PMP22 family protein, expressed
LOC_Os01g12810Os.17393.1.S1_at11/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12810Os.34746.2.S1_at1/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12820Os.9704.1.S1_at10/111+7092409..7094190Harpin-induced protein 1 containing protein, expressed
LOC_Os01g12830Os.49556.1.S1_at11/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12830OsAffx.23220.1.S1_x_at10/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12840Os.23620.1.A1_a_at11/111+7101075..7105897expressed protein
LOC_Os01g12840Os.23620.1.A2_at7/111+7101075..7105897expressed protein
LOC_Os01g12850OsAffx.11022.1.S1_at11/111+7107955..7108242hypothetical protein
LOC_Os01g12860Os.22373.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860OsAffx.27908.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23748.1.A1_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23747.1.S1_s_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12870Os.12062.2.S1_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12870Os.12062.1.S1_a_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12880Os.3558.1.S1_at11/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12880Os.3558.2.S1_x_at10/111+7125951..7134131VHS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23620.1.A1_a_at--551--2911Chr01:7103643..7103667 (25 bp)
AAGGTTGTATCTCACACAAGTCGAA
LOC_Os01g12840
Os.23620.1.A1_a_at--717--2491Chr01:7103512..7103536 (25 bp)
AACAGGATCAGCATCTCGGTCTAGT
LOC_Os01g12840
Os.23620.1.A1_a_at--357--1191Chr01:7103442..7103466 (25 bp)
AGTAGCAGCTCTTCAACATGTCGCA
LOC_Os01g12840
Os.23620.1.A1_a_at--188--771Chr01:7103425..7103449 (25 bp)
ATGTCGCACAAGGAAGCCGGTCGCA
LOC_Os01g12840
Os.23620.1.A1_a_at--638--7211Chr01:7103406..7103430 (25 bp)
GTCGCACGTAAAGCACCTAGTAATT
LOC_Os01g12840
Os.23620.1.A1_a_at--223--931Chr01:7103372..7103396 (25 bp)
AGGCAGTGTCCAGTAGAAGTCGCAA
LOC_Os01g12840
Os.23620.1.A1_a_at--1090--8591Chr01:7103071..7103095 (25 bp)
TGGTCCATCCACTGAACATAGCGCA
LOC_Os01g12840
Os.23620.1.A1_a_at--691--10831Chr01:7103011..7103035 (25 bp)
TTGGGACACAGAGCCTAGCATTGAT
LOC_Os01g12840
Os.23620.1.A1_a_at--1104--1111Chr01:7102356..7102380 (25 bp)
AGTGACTACCAGCTCTGCGGAAAGA
LOC_Os01g12840
Os.23620.1.A1_a_at--715--1571Chr01:7102323..7102347 (25 bp)
AGCTAACGGAGATCCTTTTCACCCA
LOC_Os01g12840
Os.23620.1.A1_a_at--942--10311Chr01:7102307..7102331 (25 bp)
TTTCACCCATCGACACACTTAGTAT
LOC_Os01g12840
Target Sequence 
AAGGTTGTATCTCACACAAGTCGAAAGCAACAAATAAAAGAGACCACTGAAATGGGCAGGAGAAGTAGTGACAAACAAAG
ACCTCATTCGACTTATAGGAACAGAGAAGGGAGGAAGGATACNNAGTCTAAAACAGGATCAGCATCTCGGTCTAGTGCTA
ATACAGTGAAAAGGCCTGATAAGAAATCAATGATTGCATCAAGTAGCAGCTCTTCAACATGTCGCACAAGGAAGCCGGTC
GCACGTAAAGCACCTAGTAATTCGAGGGAGAAGGCAGTGTCCAGTAGAAGTCGCAAGAACTCAACTATTGATGACATTGT
GGCATATGAGCTGCACAGAGAGTTCATACAAGTTGATGGTCCATCCACTGAACATAGCGCAACACCTAGTGATGAAAGCT
GCCAAAGTGTTGTTGATTGGGACACAGAGCCTAGCATTGATGGCATTCGGGAAGATTTGAGTGAATCCTATGAAGCTNCA
GTGACTACCAGCTCTGCGGAAAGAACCGATTCAGCTAACGGAGATCCTTTTCACCCATCGACACACTTAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23620.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis