Browse Element(s) Details


Os.23620.1.A2_at

Description gb:AK065657.1
DB_XREF= gi:32975675
TID=Os.23620.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0452F10.20 (P0452F10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042E14, full insert sequence.
FL= gb:AK058920.1 gb:AK065657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g128407/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12790OsAffx.22085.1.S1_at11/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12790Os.27098.3.S1_x_at7/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12800Os.37011.1.S1_at11/111+7082675..7085992Mpv17/PMP22 family protein, expressed
LOC_Os01g12810Os.17393.1.S1_at11/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12810Os.34746.2.S1_at1/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12820Os.9704.1.S1_at10/111+7092409..7094190Harpin-induced protein 1 containing protein, expressed
LOC_Os01g12830Os.49556.1.S1_at11/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12830OsAffx.23220.1.S1_x_at10/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12840Os.23620.1.A1_a_at11/111+7101075..7105897expressed protein
LOC_Os01g12840Os.23620.1.A2_at7/111+7101075..7105897expressed protein
LOC_Os01g12850OsAffx.11022.1.S1_at11/111+7107955..7108242hypothetical protein
LOC_Os01g12860Os.22373.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860OsAffx.27908.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23748.1.A1_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23747.1.S1_s_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12870Os.12062.2.S1_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12870Os.12062.1.S1_a_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12880Os.3558.1.S1_at11/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12880Os.3558.2.S1_x_at10/111+7125951..7134131VHS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23620.1.A2_at--860--3691Chr01:7101639..7101663 (25 bp)
CTATCTTGTGTTACATTTCACCTGT
LOC_Os01g12840
Os.23620.1.A2_at--450--5331Chr01:7101571..7101595 (25 bp)
GAAGTGATGGAGTTGTCTTCACCAA
LOC_Os01g12840
Os.23620.1.A2_at--799--5611Chr01:7101501..7101525 (25 bp)
GACAAAGAGCAATGTTTCGTTTCAC
LOC_Os01g12840
Os.23620.1.A2_at--949--9391Chr01:7101485..7101509 (25 bp)
TCGTTTCACTTTTTCCTTTCGATGA
LOC_Os01g12840
Os.23620.1.A2_at--643--5511NONE
GAACAATGCCGAGGAATCGCAAATA
NONE
Os.23620.1.A2_at--1028--2912Chr10:1874980..1875006 (23 bp)
AAGGACAGTTCTTGTTTTCATTTCT
NONE
Os.23620.1.A2_at--78--2351NONE
AAAGCTAGTTGAATACCCGTATGTT
NONE
Os.23620.1.A2_at--583--2311Chr01:7101357..7101381 (25 bp)
AAAGGGTCACGCTCATATAATTAGG
LOC_Os01g12840
Os.23620.1.A2_at--903--4051Chr01:7101273..7101297 (25 bp)
CGAGAACACACGTACATTGAGAGGA
LOC_Os01g12840
Os.23620.1.A2_at--979--5511NONE
GAAAATGCACACTACGCTCGGAAGG
NONE
Os.23620.1.A2_at--449--8371NONE
GGCGAAGTAGTCTATTAGCGTCTAT
NONE
Target Sequence 
CTATCTTGTGTTACATTTCACCTGTGTAAAAAATGAAAAATGTGCAATGATTTAGAGAGTTGCCTAAAGAAGTGATGGAG
TTGTCTTCACCAAGAAACAATTGTAATTTGTGCACAAGGTATGAAGGCATGATGAATAGACAAAGAGCAATGTTTCGTTT
CACTTTTTCCTTTCGATGAATGAACAATGCCGAGGAATCGCAAATAGCAATGAGCAAGGACAGTTCTTGTTTTCATTTCT
TTTTTTTTTAAAAAAAAGCTAGTTGAATACCCGTATGTTATAAAGGGTCACGCTCATATAATTAGGGACGGATTAGACGG
GTGATTGATGATACAATATTGGATCTGGTGGTTACTTTTTACAAACGAGAACACACGTACATTGAGAGGAGGAAATAAAA
GGAGAAGGGCCCCATTTTTAAAGTAGTAACTAGCATTGAGAGTAGGAAATAAAATGAGGACAGTTGTGTTTGCTAGGGGA
GGATGGGAAAATGCACACTACGCTCGGAAGGCGAAGTAGTCTATTAGCGTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23620.1.A2_at     

Putative homologies in rice

Putative homologies in arabidopsis