Browse Element(s) Details


OsAffx.27908.1.S1_at

Description gb:NM_188594.1
DB_XREF= gi:34904271
GEN=P0452F10.24
TID=OsAffx.27908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) myb-like protein (P0452F10.24), mRNA.
PROD=myb-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1286011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12810Os.17393.1.S1_at11/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12810Os.34746.2.S1_at1/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12820Os.9704.1.S1_at10/111+7092409..7094190Harpin-induced protein 1 containing protein, expressed
LOC_Os01g12830Os.49556.1.S1_at11/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12830OsAffx.23220.1.S1_x_at10/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12840Os.23620.1.A1_a_at11/111+7101075..7105897expressed protein
LOC_Os01g12840Os.23620.1.A2_at7/111+7101075..7105897expressed protein
LOC_Os01g12850OsAffx.11022.1.S1_at11/111+7107955..7108242hypothetical protein
LOC_Os01g12860Os.22373.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860OsAffx.27908.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23748.1.A1_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23747.1.S1_s_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12870Os.12062.2.S1_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12870Os.12062.1.S1_a_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12880Os.3558.1.S1_at11/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12880Os.3558.2.S1_x_at10/111+7125951..7134131VHS domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27908.1.S1_at--361--9451Chr01:7117937..7117961 (25 bp)
TCGGCAGTTAATGCATTCAACCATG
LOC_Os01g12860
OsAffx.27908.1.S1_at--298--3011Chr01:7117946..7117970 (25 bp)
AATGCATTCAACCATGAATGTCTGC
LOC_Os01g12860
OsAffx.27908.1.S1_at--19--4211Chr01:7117993..7118017 (25 bp)
CCCCTACTCATGATGAAAGCACGGG
LOC_Os01g12860
OsAffx.27908.1.S1_at--247--2731Chr01:7118009..7118033 (25 bp)
AAGCACGGGCGTTTTGCTGAAGAGT
LOC_Os01g12860
OsAffx.27908.1.S1_at--414--1351Chr01:7118082..7118106 (25 bp)
AGAGATCTCTTGTCTCCTATTCCAG
LOC_Os01g12860
OsAffx.27908.1.S1_at--654--3791Chr01:7118165..7118189 (25 bp)
CTCCACCGGCATTCAAACAAGTTGT
LOC_Os01g12860
OsAffx.27908.1.S1_at--525--6291Chr01:7118205..7118229 (25 bp)
GATGATGCACTTATAACTACAGTTT
LOC_Os01g12860
OsAffx.27908.1.S1_at--102--211Chr01:7118302..7118326 (25 bp)
ATTTGGGCTACACAACTGAACAGAC
LOC_Os01g12860
OsAffx.27908.1.S1_at--49--5651Chr01:7118335..7118359 (25 bp)
GACAGAGTGCTGGAAATGACGAACA
LOC_Os01g12860
OsAffx.27908.1.S1_at--704--2991Chr01:7118349..7118373 (25 bp)
AATGACGAACACATGGACGAGCAGA
LOC_Os01g12860
OsAffx.27908.1.S1_at--440--751Chr01:7118401..7118425 (25 bp)
ATGTAGCTACTAATGATGACCTGTC
LOC_Os01g12860
Target Sequence 
TCGGCAGTTAATGCATTCAACCATGAATGTCTGCACGCCAATGAGATTGTGGGGCTCCCCTACTCATGATGAAAGCACGG
GCGTTTTGCTGAAGAGTGCTGCCAAAAGCTTCATATGCACGCCATCAATACTGAAGAAACGTCACAGAGATCTCTTGTCT
CCTATTCCAGATAAAAGAATCGAGAAGAAATATGGGACTGAAAAGGATCGTGGGGTATCAGACACATCCTCCACCGGCAT
TCAAACAAGTTGTATCAATGCCACTAAAGATGATGCACTTATAACTACAGTTTTGCGTATTGAGCGATCTGCTTCTTCTA
AATCTCTGGAAAAGAAACTTGTTTTCTCTGATGAAAACAAGGAAAATTTGGGCTACACAACTGAACAGACAAAAGATGGA
CAGAGTGCTGGAAATGACGAACACATGGACGAGCAGACAACAGGGGAACGCAGTTCTGCAACAAATGTAGCTACTAATGA
TGACCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis