Browse Element(s) Details


Os.23747.1.S1_s_at

Description gb:CA760389
DB_XREF= gi:25804428
DB_XREF=BR060012A20A12.ab1
CLONE=BR060012A20A12.ab1
TID=Os.23747.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23747 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568249.1 (A.thaliana) MYB like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1357011/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g128601/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13520OsAffx.14940.1.S1_x_at1/1112+7585029..7585565hypothetical protein
LOC_Os12g13530OsAffx.31727.1.S1_at11/1112+7589420..7591641hypothetical protein
LOC_Os12g13530OsAffx.9532.1.S1_x_at1/1112+7589420..7591641hypothetical protein
LOC_Os12g13540OsAffx.31728.1.S1_at11/1112+7597078..7597347hypothetical protein
LOC_Os12g13550Os.53109.1.S1_at11/1112+7599452..7604327NB-ARC domain containing protein, expressed
LOC_Os12g13560NANA12+7608254..7608580hypothetical protein
LOC_Os12g13570Os.23747.1.S1_s_at11/1112+7609711..7617485Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g13580OsAffx.7583.1.S1_at11/1112+7619064..7622173hypothetical protein
LOC_Os12g13590Os.11598.1.S1_at11/1112+7627909..7641698Exocyst complex component Sec10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23747.1.S1_s_at--545--9131Chr12:7610535..7610559 (25 bp)
TGCTGGCAAGTGGTGGCCAATCTGA
LOC_Os12g13570
Os.23747.1.S1_s_at--886--7931Chr12:7610073..7610097 (25 bp)
GGATTTCAACGAATGTGCCACACCT
LOC_Os12g13570
Os.23747.1.S1_s_at--879--8691Chr12:7610060..7610084 (25 bp)
TGTGCCACACCTATAAGATCATCAG
LOC_Os12g13570
Os.23747.1.S1_s_at--191--2691Chr12:7610029..7610053 (25 bp)
AAGCTGGCAGCAGTCTGGGAAGATC
LOC_Os12g13570
Os.23747.1.S1_s_at--866--8171Chr12:7610012..7610036 (25 bp)
GGAAGATCTTTGAGCTCCCCTATTC
LOC_Os12g13570
Os.23747.1.S1_s_at--821--331Chr12:7609940..7609964 (25 bp)
ATACACCTCAGGTTAGCTGTAACAA
LOC_Os12g13570
Os.23747.1.S1_s_at--397--5731Chr12:7609839..7609863 (25 bp)
GACTGCTATCGCCAGCTTACAATTT
LOC_Os12g13570
Os.23747.1.S1_s_at--126--9672Chr01:7120684..7120869 (25 bp)
TCAGCCCAGAAGCTAGCTTCCAAAA
LOC_Os01g12860
Os.23747.1.S1_s_at--1110--4871Chr12:7609800..7609824 (25 bp)
GCTTCCAAAAGGCAGCAGAATACTT
LOC_Os12g13570
Os.23747.1.S1_s_at--313--5231Chr12:7609783..7609807 (25 bp)
GAATACTTGGGCTGTTGAAGCTGTA
LOC_Os12g13570
Os.23747.1.S1_s_at--967--10191Chr12:7609720..7609744 (25 bp)
TATTATTTGACATTCCAGGCCTCTT
LOC_Os12g13570
Target Sequence 
TGCTGGCAAGTGGTGGCCAATCTGAGAACATAAATTCTGATAAGGAAAACCTGGAGAATCCAGATGCCAAGAAGGAACCA
GGAGCAACAACCAAATTGCAAGCAAAAATCAAGACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAG
ATCATCAGATAAAAAAGCTGGCAGCAGTCTGGGAAGATCTTTGAGCTCCCCTATTCCTTCGTCCCATCTCCTGAAAAGNT
TTCGATAGGTAGATATATGAGGAATACACCTCAGGTTAGCTGTAACAATCATTATGTGAAACTGNGAATCTTGNTCATTA
CCGNATTCTTTGNGATTATTACCGTAAAGAAAGCTGCTTCTTGNGACTGCTATCGCCAGCTTACAATTTCAGCCCAGAAG
CTAGCTTCCAAAAGGCAGCAGAATACTTGGGCTGTTGAAGCTGTAGTATTTAAATTTAGAAATTTTAATTTATTCCTGTT
CAATATTATTTGACATTCCAGGCCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23747.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis