Browse Element(s) Details


OsAffx.31727.1.S1_at

Description tigr:9640.m01307
TID=OsAffx.31727.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1353011/11hypothetical protein
LOC_Os06g394006/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13490OsAffx.18377.1.S1_at4/1112+7571977..7574844hypothetical protein
LOC_Os12g13490OsAffx.18377.1.S1_x_at3/1112+7571977..7574844hypothetical protein
LOC_Os12g13500OsAffx.19650.1.S1_at11/1112+7580100..7580585hypothetical protein
LOC_Os12g13520OsAffx.14940.1.S1_x_at1/1112+7585029..7585565hypothetical protein
LOC_Os12g13530OsAffx.31727.1.S1_at11/1112+7589420..7591641hypothetical protein
LOC_Os12g13530OsAffx.9532.1.S1_x_at1/1112+7589420..7591641hypothetical protein
LOC_Os12g13540OsAffx.31728.1.S1_at11/1112+7597078..7597347hypothetical protein
LOC_Os12g13550Os.53109.1.S1_at11/1112+7599452..7604327NB-ARC domain containing protein, expressed
LOC_Os12g13560NANA12+7608254..7608580hypothetical protein
LOC_Os12g13570Os.23747.1.S1_s_at11/1112+7609711..7617485Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31727.1.S1_at--23--8552Chr12:7591063..7591084 (22 bp)
TGGAGCTCAGATACGCCTGCTACAA
LOC_Os12g13530
OsAffx.31727.1.S1_at--84--9612Chr12:7591108..7591132 (25 bp)
TCATACTCCTCCGTGGTGTTGGAAA
LOC_Os12g13530
OsAffx.31727.1.S1_at--666--2371Chr12:7591167..7591191 (25 bp)
AAACTCCGAGTCAACCAAGGCGGCT
LOC_Os12g13530
OsAffx.31727.1.S1_at--377--5771Chr12:7591213..7591237 (25 bp)
GACGAGGTTTCGACACAGCTAGTGA
LOC_Os12g13530
OsAffx.31727.1.S1_at--96--1032Chr12:7591253..7591277 (25 bp)
AGGTACTTTCTACTGAGGTTGCTGT
LOC_Os12g13530
OsAffx.31727.1.S1_at--226--751Chr12:7591361..7591385 (25 bp)
ATGTTTCAGCTAGCTTGTTGTCTCC
LOC_Os12g13530
OsAffx.31727.1.S1_at--142--7172Chr12:7591380..7591404 (25 bp)
GTCTCCCGTGGAGCATGTATTGGAT
LOC_Os12g13530
OsAffx.31727.1.S1_at--51--2591Chr12:7591408..7591432 (25 bp)
AACGTGCAGTCTGAATTGTTCCCCG
LOC_Os12g13530
OsAffx.31727.1.S1_at--1123--3131Chr12:7591421..7591445 (25 bp)
AATTGTTCCCCGAGAATAGCCGGCT
LOC_Os12g13530
OsAffx.31727.1.S1_at--1122--4772Chr12:7591528..7591552 (25 bp)
GCTGCCACATCTAAAGCCCAGGATT
LOC_Os12g13530
OsAffx.31727.1.S1_at--953--1492Chr12:7591554..7591578 (25 bp)
AGCACAGGCAGTTGGAGCTCGATCC
LOC_Os12g13530
Target Sequence 
TGGAGCTCAGATACGCCTGCTACAACAACAGAGTTGAAAGCATTTGCCTCATACTCCTCCGTGGTGTTGGAAACGCCCAT
GAGTCAATTGGGAGCCCAAGGGACAGGAAACTCCGAGTCAACCAAGGCGGCTGTTGGTGAGGTGGTGTACTCCGACGAGG
TTTCGACACAGCTAGTGAAGTTGGCAACGACTAAGGTACTTTCTACTGAGGTTGCTGTGCAGCTAGCAGGAACAGATGAG
GTGGTTACGAATGGCAAAGAGCAACAACAAGAACCTGTCAGCATTGCACAAGAATTACAGCATGTTTCAGCTAGCTTGTT
GTCTCCCGTGGAGCATGTATTGGATTGCAACGTGCAGTCTGAATTGTTCCCCGAGAATAGCCGGCTTGCAGGCGATGGAA
GAGTAGCATCGACTAAGAACTTGATGGCAGTACTAGCAACCAATGAAGACCAACTTAGTGCCTCCAGGGCTGCCACATCT
AAAGCCCAGGATTCAGCACAGGCAGTTGGAGCTCGATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis