Browse Element(s) Details


OsAffx.31728.1.S1_at

Description tigr:9640.m01308
TID=OsAffx.31728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1354011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13490OsAffx.18377.1.S1_at4/1112+7571977..7574844hypothetical protein
LOC_Os12g13490OsAffx.18377.1.S1_x_at3/1112+7571977..7574844hypothetical protein
LOC_Os12g13500OsAffx.19650.1.S1_at11/1112+7580100..7580585hypothetical protein
LOC_Os12g13520OsAffx.14940.1.S1_x_at1/1112+7585029..7585565hypothetical protein
LOC_Os12g13530OsAffx.31727.1.S1_at11/1112+7589420..7591641hypothetical protein
LOC_Os12g13530OsAffx.9532.1.S1_x_at1/1112+7589420..7591641hypothetical protein
LOC_Os12g13540OsAffx.31728.1.S1_at11/1112+7597078..7597347hypothetical protein
LOC_Os12g13550Os.53109.1.S1_at11/1112+7599452..7604327NB-ARC domain containing protein, expressed
LOC_Os12g13560NANA12+7608254..7608580hypothetical protein
LOC_Os12g13570Os.23747.1.S1_s_at11/1112+7609711..7617485Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g13580OsAffx.7583.1.S1_at11/1112+7619064..7622173hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31728.1.S1_at--233--9291Chr12:7597108..7597132 (25 bp)
TCCGATCCAGCAGTAGGGAGGTACT
LOC_Os12g13540
OsAffx.31728.1.S1_at--58--6151Chr12:7597125..7597149 (25 bp)
GAGGTACTTGGGTGGCGGATCCAGC
LOC_Os12g13540
OsAffx.31728.1.S1_at--616--4491Chr12:7597171..7597195 (25 bp)
GCCGGTGGAGCATGGCTGCGCGTGT
LOC_Os12g13540
OsAffx.31728.1.S1_at--760--7471Chr12:7597192..7597216 (25 bp)
GTGTGGGCGGGCAATGAAGCTCAGA
LOC_Os12g13540
OsAffx.31728.1.S1_at--702--2991Chr12:7597204..7597228 (25 bp)
AATGAAGCTCAGACGGCGGCGGATC
LOC_Os12g13540
OsAffx.31728.1.S1_at--354--10031Chr12:7597265..7597289 (25 bp)
TAGAGCTCGGGCACGACTATGTCTA
LOC_Os12g13540
OsAffx.31728.1.S1_at--351--4811Chr12:7597269..7597293 (25 bp)
GCTCGGGCACGACTATGTCTACGGA
LOC_Os12g13540
OsAffx.31728.1.S1_at--159--7611Chr12:7597273..7597297 (25 bp)
GGGCACGACTATGTCTACGGACGAG
LOC_Os12g13540
OsAffx.31728.1.S1_at--1031--1851Chr12:7597277..7597301 (25 bp)
ACGACTATGTCTACGGACGAGGCTT
LOC_Os12g13540
OsAffx.31728.1.S1_at--206--771Chr12:7597283..7597307 (25 bp)
ATGTCTACGGACGAGGCTTGCGTGT
LOC_Os12g13540
OsAffx.31728.1.S1_at--1006--1871Chr12:7597293..7597317 (25 bp)
ACGAGGCTTGCGTGTGCGGGTCCTG
LOC_Os12g13540
Target Sequence 
TCCGATCCAGCAGTAGGGAGGTACTTGGGTGGCGGATCCAGCGGCGGAGAGGCTCGTGGGTGGGCCGGTGGAGCATGGCT
GCGCGTGTGGGCGGGCAATGAAGCTCAGACGGCGGCGGATCCAGTGGCAGGGAGGCTCGCGGTGGCGAGCGGGCTGGTAG
AGCTCGGGCACGACTATGTCTACGGACGAGGCTTGCGTGTGCGGGTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis