Browse Element(s) Details


Os.11598.1.S1_at

Description gb:AK064983.1
DB_XREF= gi:32975001
TID=Os.11598.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001C13, full insert sequence.
FL= gb:AK064983.1 gb:AK062178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1359011/11Exocyst complex component Sec10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13550Os.53109.1.S1_at11/1112+7599452..7604327NB-ARC domain containing protein, expressed
LOC_Os12g13560NANA12+7608254..7608580hypothetical protein
LOC_Os12g13570Os.23747.1.S1_s_at11/1112+7609711..7617485Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g13580OsAffx.7583.1.S1_at11/1112+7619064..7622173hypothetical protein
LOC_Os12g13590Os.11598.1.S1_at11/1112+7627909..7641698Exocyst complex component Sec10, putative, expressed
LOC_Os12g13600NANA12+7645352..7645633hypothetical protein
LOC_Os12g13610OsAffx.19652.1.S1_at11/1112+7647146..7647834expressed protein
LOC_Os12g13620Os.40360.1.S1_x_at1/1112+7654913..7655626hypothetical protein
LOC_Os12g13630OsAffx.19653.1.S1_at11/1112+7660566..7661150hypothetical protein
LOC_Os12g13640Os.18105.1.S1_at11/1112+7662344..7666944HGA6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11598.1.S1_at--998--8211Chr12:7628637..7628661 (25 bp)
GGAATTCGTTCGTAGCTTCAATGCC
LOC_Os12g13590
Os.11598.1.S1_at--40--4911Chr12:7628623..7628647 (25 bp)
GCTTCAATGCCCCATCGATAGATGA
LOC_Os12g13590
Os.11598.1.S1_at--346--4391Chr12:7628492..7628516 (25 bp)
CCAATGTATTCATCGTTGCTCCTGA
LOC_Os12g13590
Os.11598.1.S1_at--74--4791Chr12:7628475..7628499 (25 bp)
GCTCCTGAAAGTCTAGCTTCCTTAT
LOC_Os12g13590
Os.11598.1.S1_at--469--5571Chr12:7628341..7628452 (25 bp)
GAAAGATGCCTTGCGGTTCATTCAA
LOC_Os12g13590
Os.11598.1.S1_at--723--7871Chr12:7628327..7628351 (25 bp)
GGTTCATTCAACTCAGGGACGACTA
LOC_Os12g13590
Os.11598.1.S1_at--202--1531Chr12:7628240..7628264 (25 bp)
AGCAGTATGTTTGAGCCGCATTCAC
LOC_Os12g13590
Os.11598.1.S1_at--86--10311Chr12:7628213..7628237 (25 bp)
TTTCTGCTGCCTATCAAACTTCAAG
LOC_Os12g13590
Os.11598.1.S1_at--37--8971Chr12:7628184..7628208 (25 bp)
TGAAATGATTCAGTGCCCTCCAAAT
LOC_Os12g13590
Os.11598.1.S1_at--228--7031Chr12:7628051..7628075 (25 bp)
GTACATGCTGTATCAGTCTCTCTAA
LOC_Os12g13590
Os.11598.1.S1_at--1072--3511Chr12:7627976..7628000 (25 bp)
CATGATTGTATCACGCGCGACGACG
LOC_Os12g13590
Target Sequence 
GGAATTCGTTCGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATCATGGCCAATGTATTCATCG
TTGCTCCTGAAAGTCTAGCTTCCTTATTTGAAGGAACCCCCAGTATCCGGAAAGATGCCTTGCGGTTCATTCAACTCAGG
GACGACTATAAGACAGCAAAAATCGCTTCCATGCTAAACAGTATCATGGCTGAATAGTGTCACGTCAAGAAGCAGTATGT
TTGAGCCGCATTCACACTTTCTGCTGCCTATCAAACTTCAAGTCTATGAAATGATTCAGTGCCCTCCAAATGATTTTGAC
CATCCATGTCGCCTGTATAGCACAGATTCATGATTATGTTAATTCTTTGGGTTTTCTTTGTTCCATTTTTTTTCCCTATC
CTATTTTGGGCTTGCATTTGTACATGCTGTATCAGTCTCTCTAAATATGACCATTGTACCAAGTGGCATAAGTAGTATTT
AACGTTCAGTTGTTCATGATTGTATCACGCGCGACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis