Browse Element(s) Details


OsAffx.19652.1.S1_at

Description tigr:9640.m01316
TID=OsAffx.19652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1361011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13580OsAffx.7583.1.S1_at11/1112+7619064..7622173hypothetical protein
LOC_Os12g13590Os.11598.1.S1_at11/1112+7627909..7641698Exocyst complex component Sec10, putative, expressed
LOC_Os12g13600NANA12+7645352..7645633hypothetical protein
LOC_Os12g13610OsAffx.19652.1.S1_at11/1112+7647146..7647834expressed protein
LOC_Os12g13620Os.40360.1.S1_x_at1/1112+7654913..7655626hypothetical protein
LOC_Os12g13630OsAffx.19653.1.S1_at11/1112+7660566..7661150hypothetical protein
LOC_Os12g13640Os.18105.1.S1_at11/1112+7662344..7666944HGA6, putative, expressed
LOC_Os12g13650OsAffx.19654.1.S1_at10/1112+7672802..7674141hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19652.1.S1_at--119--1311Chr12:7647176..7647200 (25 bp)
AGATGTCCTCAAGAGGTCCTCGGGA
LOC_Os12g13610
OsAffx.19652.1.S1_at--1001--3531Chr12:7647220..7647244 (25 bp)
CATCGTCGCAAAGAACGGCGCGCTG
LOC_Os12g13610
OsAffx.19652.1.S1_at--1058--4571Chr12:7647239..7647263 (25 bp)
GCGCTGCTAGCGTCGTCCAGGAAGC
LOC_Os12g13610
OsAffx.19652.1.S1_at--838--3471Chr12:7647256..7647280 (25 bp)
CAGGAAGCCGAGTGTCATCGTCGAC
LOC_Os12g13610
OsAffx.19652.1.S1_at--459--9511Chr12:7647270..7647294 (25 bp)
TCATCGTCGACCAGGCGTTGGGAAC
LOC_Os12g13610
OsAffx.19652.1.S1_at--369--6631Chr12:7647286..7647310 (25 bp)
GTTGGGAACTCAAGCAGGCGCAGTC
LOC_Os12g13610
OsAffx.19652.1.S1_at--203--4551Chr12:7647311..7647335 (25 bp)
GCCCTCCAACTTGATGGCGTCATTG
LOC_Os12g13610
OsAffx.19652.1.S1_at--342--9351Chr12:7647596..7647620 (25 bp)
TCGCTGCTGACCGTCGTGCTGGTGA
LOC_Os12g13610
OsAffx.19652.1.S1_at--552--9131Chr12:7647659..7647683 (25 bp)
TGCGGGTGCGCATCGTACTAGTGAT
LOC_Os12g13610
OsAffx.19652.1.S1_at--706--9151Chr12:7647757..7647781 (25 bp)
TGCGACGTGTCGACCACCAATGACG
LOC_Os12g13610
OsAffx.19652.1.S1_at--953--1711Chr12:7647769..7647793 (25 bp)
ACCACCAATGACGTGTCTGTGGCGA
LOC_Os12g13610
Target Sequence 
AGATGTCCTCAAGAGGTCCTCGGGACCGGGTCCATGGCCGTCTCCATCGTCGCAAAGAACGGCGCGCTGCTAGCGTCGTC
CAGGAAGCCGAGTGTCATCGTCGACCAGGCGTTGGGAACTCAAGCAGGCGCAGTCGCCCTCCAACTTGATGGCGTCATTG
GGGCCCTGCCCGGCGGCAGCCTGGAGGCGAACGCTCTCGCTGCTGACCGTCGTGCTGGTGATGGTGGCCGTGTTAGCGAG
CACGGCGATAGCGCAGAGCTGCGGGTGCGCATCGTACTAGTGATGCAGCAAGTGGGGGTTCTGGCATTCTGCGGCACCGG
CAGCGACTACTACGGCACGGGGTGCCAGGCGGGTCCCTGCGACGTGTCGACCACCAATGACGTGTCTGTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis