Browse Element(s) Details


Os.18105.1.S1_at

Description gb:AK109804.1
DB_XREF= gi:32995013
TID=Os.18105.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-F10, full insert sequence.
FL= gb:AK109804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1364011/11HGA6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13590Os.11598.1.S1_at11/1112+7627909..7641698Exocyst complex component Sec10, putative, expressed
LOC_Os12g13600NANA12+7645352..7645633hypothetical protein
LOC_Os12g13610OsAffx.19652.1.S1_at11/1112+7647146..7647834expressed protein
LOC_Os12g13620Os.40360.1.S1_x_at1/1112+7654913..7655626hypothetical protein
LOC_Os12g13630OsAffx.19653.1.S1_at11/1112+7660566..7661150hypothetical protein
LOC_Os12g13640Os.18105.1.S1_at11/1112+7662344..7666944HGA6, putative, expressed
LOC_Os12g13650OsAffx.19654.1.S1_at10/1112+7672802..7674141hypothetical protein
LOC_Os12g13660Os.54031.1.S1_at11/1112+7676115..7683511expressed protein
LOC_Os12g13670Os.52726.1.S1_at11/1112+7686375..7696616expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18105.1.S1_at--425--4671Chr12:7666372..7666396 (25 bp)
GCGTGGCACGGCTCGTCAACTCGTT
LOC_Os12g13640
Os.18105.1.S1_at--960--1011Chr12:7666545..7666569 (25 bp)
AGGTACATCCAGTACGAGGTCGCCG
LOC_Os12g13640
Os.18105.1.S1_at--1058--7671Chr12:7666647..7666671 (25 bp)
GGGTTCACGTTCATGAGGCACACGT
LOC_Os12g13640
Os.18105.1.S1_at--729--6191Chr12:7666661..7666685 (25 bp)
GAGGCACACGTTTCTGAACGGCCAG
LOC_Os12g13640
Os.18105.1.S1_at--340--2571Chr12:7666677..7666701 (25 bp)
AACGGCCAGGACATCATCGTCGACA
LOC_Os12g13640
Os.18105.1.S1_at--1044--4551Chr12:7666746..7666770 (25 bp)
GCGCGCTAACCTAGGGTCTGTTTGG
LOC_Os12g13640
Os.18105.1.S1_at--146--8271Chr12:7666769..7666793 (25 bp)
GGCAGAGCTCTAGCGCAAGTCTAAT
LOC_Os12g13640
Os.18105.1.S1_at--162--711Chr12:7666796..7666820 (25 bp)
ATGAGTCTAGGGTCCGTTCTGCATT
LOC_Os12g13640
Os.18105.1.S1_at--452--91Chr12:7666818..7666842 (25 bp)
ATTCGGCCTAAGCACGCAAACGTGT
LOC_Os12g13640
Os.18105.1.S1_at--222--2391Chr12:7666835..7666859 (25 bp)
AAACGTGTTCGGTCTGGCCCACATG
LOC_Os12g13640
Os.18105.1.S1_at--106--10711Chr12:7666864..7666888 (25 bp)
TTGCCCATCTTGAGACACTGTGCTA
LOC_Os12g13640
Target Sequence 
GCGTGGCACGGCTCGTCAACTCGTTCGACGCGGTGGTGGGCGTGCACGGCGCCGGGCTGACGAACATGGTGTTCCTGCCA
CCCGGCGCCGCGGCGGTGCAGATCGTGCCGTGGGGCGGTCTCCGGTGGCTGGCGCGGGCGGACTTCGGCGAGCCGGCGGT
GGCGATGGGGCTCAGGTACATCCAGTACGAGGTCGCCGCCGGCGAGAGCACGCTCAAGGACAANGTACCCNGCGAGACCN
ACGAGATATTCACCAANNCCCGACGGCGCTGCACAAGAAGGGGTTCACGTTCATGAGGCACACGTTTCTGAACGGCCAGG
ACATCATCGTCGACATCGACCGCTTCAAGCCGGTGNTNCTCCGCGCACTCAACAGCCTCGCGCGCTAACCTAGGGTCTGT
TTGGCAGAGCTCTAGCGCAAGTCTAATGGATGAGTCTAGGGTCCGTTCTGCATTCGGCCTAAGCACGCAAACGTGTTCGG
TCTGGCCCACATGCGTCTTGCCCATCTTGAGACACTGTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis