Browse Element(s) Details


Os.54031.1.S1_at

Description gb:AK101424.1
DB_XREF= gi:32986633
TID=Os.54031.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033038E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033038E12, full insert sequence.
FL= gb:AK101424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1366011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13620Os.40360.1.S1_x_at1/1112+7654913..7655626hypothetical protein
LOC_Os12g13630OsAffx.19653.1.S1_at11/1112+7660566..7661150hypothetical protein
LOC_Os12g13640Os.18105.1.S1_at11/1112+7662344..7666944HGA6, putative, expressed
LOC_Os12g13650OsAffx.19654.1.S1_at10/1112+7672802..7674141hypothetical protein
LOC_Os12g13660Os.54031.1.S1_at11/1112+7676115..7683511expressed protein
LOC_Os12g13670Os.52726.1.S1_at11/1112+7686375..7696616expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54031.1.S1_at--138--951Chr12:7676680..7676704 (25 bp)
AGGAAGCTGAATTCGCTCATGCCCC
LOC_Os12g13660
Os.54031.1.S1_at--204--5271Chr12:7676537..7676561 (25 bp)
GAATCCATCACAGATACTGCCAGGA
LOC_Os12g13660
Os.54031.1.S1_at--845--3351Chr12:7676488..7676512 (25 bp)
CACCTGTACGTTCTTCTTCTGAAAT
LOC_Os12g13660
Os.54031.1.S1_at--180--10171Chr12:7676342..7676366 (25 bp)
TATAGTAGTTTCGTTTTGGGCGCAA
LOC_Os12g13660
Os.54031.1.S1_at--1103--10811Chr12:7676327..7676351 (25 bp)
TTGGGCGCAAACCACTACTGCAAGA
LOC_Os12g13660
Os.54031.1.S1_at--572--2791Chr12:7676306..7676330 (25 bp)
AAGATGAACCCTGCACCAGTTGAGC
LOC_Os12g13660
Os.54031.1.S1_at--1064--5951Chr12:7676266..7676290 (25 bp)
GAGAAAATTTTCTGGCCACGGTGCA
LOC_Os12g13660
Os.54031.1.S1_at--721--8431Chr12:7676253..7676277 (25 bp)
GGCCACGGTGCATTTATTTTCTTTT
LOC_Os12g13660
Os.54031.1.S1_at--96--1051Chr12:7676212..7676236 (25 bp)
AGGTGCTTGGGCTATTCTTTTGTAA
LOC_Os12g13660
Os.54031.1.S1_at--367--4211Chr12:7676176..7676200 (25 bp)
CCCCTTTTTGCTCTGTATGTTTATT
LOC_Os12g13660
Os.54031.1.S1_at--1157--731Chr12:7676160..7676184 (25 bp)
ATGTTTATTCTACGTTCTGCTTGCC
LOC_Os12g13660
Target Sequence 
AGGAAGCTGAATTCGCTCATGCCCCTCGACCAACAGTGACCATGGTAGAAAAATTCATTCCAAGGGAAGATGGTTTGTTG
AGAGGTCCTCAGAGGCGAACGACAAGGCGTAAGGTTGAAAGGAAAATACCAGAAGGTGATGGAGAATCCATCACAGATAC
TGCCAGGACAGAAGTAATTACTAAAGAGCCAGCACCTGTACGTTCTTCTTCTGAAATTACTACATTTGATAGCTTGAAGC
CTCCAAAGATGGAGTCGAAGTGCAACTGCACAATTATGTGAATTGTCCATGATTGGAATGTACCAAGGAGACCTGGGATC
TAAGTTGAAGCCTATATATATAGTAGTTTCGTTTTGGGCGCAAACCACTACTGCAAGATGAACCCTGCACCAGTTGAGCG
CAGGGGTTTCTTGTGAGAAAATTTTCTGGCCACGGTGCATTTATTTTCTTTTTTTTTTGTTGTAATAGAGGTGCTTGGGC
TATTCTTTTGTAAATTCTTCCTTCCCCCTTTTTGCTCTGTATGTTTATTCTACGTTCTGCTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis