Browse Element(s) Details


OsAffx.19654.1.S1_at

Description tigr:9640.m01320
TID=OsAffx.19654.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1365010/11hypothetical protein
LOC_Os06g510841/111,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13610OsAffx.19652.1.S1_at11/1112+7647146..7647834expressed protein
LOC_Os12g13620Os.40360.1.S1_x_at1/1112+7654913..7655626hypothetical protein
LOC_Os12g13630OsAffx.19653.1.S1_at11/1112+7660566..7661150hypothetical protein
LOC_Os12g13640Os.18105.1.S1_at11/1112+7662344..7666944HGA6, putative, expressed
LOC_Os12g13650OsAffx.19654.1.S1_at10/1112+7672802..7674141hypothetical protein
LOC_Os12g13660Os.54031.1.S1_at11/1112+7676115..7683511expressed protein
LOC_Os12g13670Os.52726.1.S1_at11/1112+7686375..7696616expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0010021biological_processamylopectin biosynthesis
GO:0003844molecular_function1,4-alpha-glucan branching enzyme activity
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19654.1.S1_at--979--3271Chr12:7672832..7672856 (25 bp)
CAAAAGCTCGAAACCTTGACGGCCT
LOC_Os12g13650
OsAffx.19654.1.S1_at--891--4311NONE
CCTTGACGGCCTTTTGTGAGTTGAA
NONE
OsAffx.19654.1.S1_at--828--10311Chr12:7673472..7673496 (25 bp)
TTTAAGCTCTTTTTGAAATTTCCAG
LOC_Os12g13650
OsAffx.19654.1.S1_at--163--8171Chr12:7673509..7673613 (25 bp)
GGAAAAGGATTTCACTCTCATATTT
LOC_Os12g13650
OsAffx.19654.1.S1_at--997--5053Chr12:7673828..7673852 (25 bp)
GCAGCCCTCATTCAACCTTTGAGGA
LOC_Os12g13650
OsAffx.19654.1.S1_at--958--2253Chr12:7673858..7673882 (25 bp)
AAATAGGGACTATTGCTGGAGATGC
LOC_Os12g13650
OsAffx.19654.1.S1_at--438--631Chr12:7673879..7673903 (25 bp)
ATGCTCGGTTGTTTGGCCACGCGCT
LOC_Os12g13650
OsAffx.19654.1.S1_at--623--4711Chr12:7673901..7673925 (25 bp)
GCTGGCATGGCCACCTCGATGGGCT
LOC_Os12g13650
OsAffx.19654.1.S1_at--805--7251Chr12:7673963..7673987 (25 bp)
GTCCAGTAGGCCACGCCACGGAGCA
LOC_Os12g13650
OsAffx.19654.1.S1_at--914--3331Chr12:7674029..7674053 (25 bp)
CACGTCGTGTTGATGTTCTTCGGGA
LOC_Os12g13650
OsAffx.19654.1.S1_at--712--731Chr12:7674041..7674065 (25 bp)
ATGTTCTTCGGGACCGACGCGACGA
LOC_Os12g13650
Target Sequence 
CAAAAGCTCGAAACCTTGACGGCCTTTTGTGAGTTGAAGTTTAACTTCAAGGTTTTTTTTCTAGGAGGATTTAAGCTCTT
TTTGAAATTTCCAGATAGATTAGATTGGAAAAGGATTTCACTCTCATATTTGAGAATTTTGAATTTGAATTATGGAAATG
GGGGCAGCCCTCATTCAACCTTTGAGGACTCTAAAATAGGGACTATTGCTGGAGATGCTCGGTTGTTTGGCCACGCGCTG
GCATGGCCACCTCGATGGGCTCCGGGCGTGTCGAAGCGCACCGCGCGCGTGCCGCAGCGTCCAGTAGGCCACGCCACGGA
GCACCACGGCGTCGGCGTGGGCGCGTGGCGAAGCTGCTGGCATCCACGTCGTGTTGATGTTCTTCGGGACCGACGCGACG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis