Browse Element(s) Details


Os.3558.2.S1_x_at

Description gb:NM_188596.1
DB_XREF= gi:34904275
GEN=P0452F10.26
TID=Os.3558.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0452F10.27 (P0452F10.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0452F10.26 (P0452F10.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1288010/11VHS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12840Os.23620.1.A1_a_at11/111+7101075..7105897expressed protein
LOC_Os01g12840Os.23620.1.A2_at7/111+7101075..7105897expressed protein
LOC_Os01g12850OsAffx.11022.1.S1_at11/111+7107955..7108242hypothetical protein
LOC_Os01g12860Os.22373.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860OsAffx.27908.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23748.1.A1_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23747.1.S1_s_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12870Os.12062.2.S1_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12870Os.12062.1.S1_a_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12880Os.3558.1.S1_at11/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12880Os.3558.2.S1_x_at10/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12890Os.3560.1.S1_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.2.S1_x_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.1.S1_a_at11/111+7154582..7161187expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3558.2.S1_x_at--11--2331Chr07:18706118..18706138 (21 bp)
AAAGTGCCAGTGTGCAGTCACCATT
NONE
Os.3558.2.S1_x_at--419--211Chr01:7132504..7132528 (25 bp)
ATTTGAGCAACTAGCGCTTCCAGCA
LOC_Os01g12880
Os.3558.2.S1_x_at--436--10851Chr01:7132575..7132599 (25 bp)
TTGGCGTCGATCTTCTTAGCTGGGA
LOC_Os01g12880
Os.3558.2.S1_x_at--528--1431Chr01:7132618..7132642 (25 bp)
AGAAAATTCACTAGCGCTTGTCCCA
LOC_Os01g12880
Os.3558.2.S1_x_at--107--351Chr01:7132725..7132749 (25 bp)
ATAACATTGCCAAACCTGCGGATCC
LOC_Os01g12880
Os.3558.2.S1_x_at--320--7951Chr01:7132744..7132768 (25 bp)
GGATCCCTTTGGTGTTAATTCTAGC
LOC_Os01g12880
Os.3558.2.S1_x_at--311--9751Chr01:7132759..7132783 (25 bp)
TAATTCTAGCTCTACTCTTCCTGGA
LOC_Os01g12880
Os.3558.2.S1_x_at--223--1491Chr01:7132839..7132863 (25 bp)
AGCAGGTGGGCCTCTATCCTAATGG
LOC_Os01g12880
Os.3558.2.S1_x_at--1142--7631Chr01:7132864..7132888 (25 bp)
GGGAGCTGTGAACCCTGGAACATCA
LOC_Os01g12880
Os.3558.2.S1_x_at--789--9871Chr01:7132982..7133006 (25 bp)
TACATTTACATTTCTCAACCTTTTT
LOC_Os01g12880
Os.3558.2.S1_x_at--602--3731Chr01:7133008..7133032 (25 bp)
CTACACCATCATCCCTATCATTGGA
LOC_Os01g12880
Target Sequence 
AAAGTGCCAGTGTGCAGTCACCATTTGAGCAACTAGCGCTTCCAGCACCTCCGGTGTCAAATGGCTCAGCAACCCCAGCA
CCAAAATCCGATCTTGGCGTCGATCTTCTTAGCTGGGATGACAACCCATCTACAACAGAAAATTCACTAGCGCTTGTCCC
AGTTACTGATCCAGTAGTTGATTCTACTCCAAGTCAAAATGCACTAGCTATCGTTGACATATTCTCTCAAAACAACACAA
CCAATAACATTGCCAAACCTGCGGATCCCTTTGGTGTTAATTCTAGCTCTACTCTTCCTGGATCACAGCCATACAATGCT
CCAACCCAGCATCCTCTGCAAGCACAGCAGCAGCCTCAGCAGGTGGGCCTCTATCCTAATGGGGGAGCTGTGAACCCTGG
AACATCATACCCCACAAGTTCTGGGTGGAATGGTCAAATTGCGAACAATGCGACGCCTCCAGCGCAGCAAACAGTGAATT
ATGGTATTGCAATTTATTTATACATTTACATTTCTCAACCTTTTTCCTACACCATCATCCCTATCATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3558.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis