Browse Element(s) Details


Os.3558.1.S1_at

Description gb:AK066024.1
DB_XREF= gi:32976042
TID=Os.3558.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0452F10.27 (P0452F10.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047G02, full insert sequence.
FL= gb:AK061937.1 gb:AK071900.1 gb:AK106136.1 gb:AK066024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1288011/11VHS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12840Os.23620.1.A1_a_at11/111+7101075..7105897expressed protein
LOC_Os01g12840Os.23620.1.A2_at7/111+7101075..7105897expressed protein
LOC_Os01g12850OsAffx.11022.1.S1_at11/111+7107955..7108242hypothetical protein
LOC_Os01g12860Os.22373.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860OsAffx.27908.1.S1_at11/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23748.1.A1_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12860Os.23747.1.S1_s_at1/111+7113923..7120872Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g12870Os.12062.2.S1_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12870Os.12062.1.S1_a_at11/111+7122208..7125692Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os01g12880Os.3558.1.S1_at11/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12880Os.3558.2.S1_x_at10/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12890Os.3560.1.S1_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.2.S1_x_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.1.S1_a_at11/111+7154582..7161187expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3558.1.S1_at--1154--1291Chr01:7133561..7133585 (25 bp)
AGATGTCCCAGTACCGGCTTGTGCA
LOC_Os01g12880
Os.3558.1.S1_at--677--1511Chr01:7133585..7133609 (25 bp)
AGCAGCAAGCGGCACAATACTACAG
LOC_Os01g12880
Os.3558.1.S1_at--482--8011Chr01:7133621..7133645 (25 bp)
GGAGGCCAACATACTACGCTGGTAT
LOC_Os01g12880
Os.3558.1.S1_at--971--8571Chr01:7133640..7133664 (25 bp)
TGGTATGAATGACCTCTCCCAGAAA
LOC_Os01g12880
Os.3558.1.S1_at--340--2991Chr01:7133664..7133688 (25 bp)
AATGTATGGCCTCTCCATGCAAGAC
LOC_Os01g12880
Os.3558.1.S1_at--521--3991Chr01:7133915..7133939 (25 bp)
CGTGGCTTGATCATACGCTGTTGTA
LOC_Os01g12880
Os.3558.1.S1_at--1058--9571Chr01:7133956..7133980 (25 bp)
TCTTGTTCCGGTTTTGTACGATGCC
LOC_Os01g12880
Os.3558.1.S1_at--498--4211Chr01:7133980..7134004 (25 bp)
CCGGCCCCGATTGATTTCATTTGAT
LOC_Os01g12880
Os.3558.1.S1_at--623--8671Chr01:7134025..7134049 (25 bp)
TGTGTACTGATCACGGCCGCTGAGA
LOC_Os01g12880
Os.3558.1.S1_at--424--4511Chr01:7134040..7134064 (25 bp)
GCCGCTGAGAGGATACGCTGGTAAA
LOC_Os01g12880
Os.3558.1.S1_at--248--4211Chr01:7134103..7134127 (25 bp)
CCCCTCTGATATACTACTGTCTTTA
LOC_Os01g12880
Target Sequence 
AGATGTCCCAGTACCGGCTTGTGCAGCAGCAAGCGGCACAATACTACAGCAACAGCCAAGGGAGGCCAACATACTACGCT
GGTATGAATGACCTCTCCCAGAAAATGTATGGCCTCTCCATGCAAGACAGCTCTTACATGGGGATGAACAGCTCGCCCTA
CTCTACAACACCTTCATCATCATCTTCCATGGGGCAACCNNNNNNNNNATCGAAGCCTGAGGACAAGCTGTTTGGAGATC
TTCTTAGCATTGCCAAAACAAAGCAGAACAAGGCTTAATGAGAAACAATCAAATGGAGTATTAAAAAAAAAAGTGTGAAG
AGGTCTAATATCTCTTGTGTAATTGTTACACATTTTTTTCCCCACGTGGCTTGATCATACGCTGTTGTAGCATTTGAATG
TATAATCTTGTTCCGGTTTTGTACGATGCCCGGCCCCGATTGATTTCATTTGATTCGTTATACATACAGTACCGTGTGTA
CTGATCACGGCCGCTGAGAGGATACGCTGGTAAATTAATTGATGATCTAGTATAATAAGCATGTNATTTTTCCCCCCTCT
GATATACTACTGTCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis