Browse Element(s) Details


Os.23748.1.A1_at

Description gb:CA760390
DB_XREF= gi:25804429
DB_XREF=BR060012B10D04.ab1
CLONE=BR060012B10D04.ab1
TID=Os.23748.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23748 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g014306/11hypothetical protein
LOC_Os06g329304/11hypothetical protein
LOC_Os09g336103/11retrotransposon protein, putative, unclassified
LOC_Os01g128601/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01370OsAffx.18618.1.S1_at10/1111+226459..230596expressed protein
LOC_Os11g01370Os.8201.1.S1_x_at4/1111+226459..230596expressed protein
LOC_Os11g01380OsAffx.18617.1.S1_at11/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01380Os.5886.1.S1_at8/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01390OsAffx.19445.1.S1_at11/1111+244190..244639EF hand family protein
LOC_Os11g01400OsAffx.31538.2.S1_x_at11/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.31538.2.S1_at10/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.21149.1.S1_x_at1/1111+246082..249718hypothetical protein
LOC_Os11g01410OsAffx.31539.2.S1_at11/1111+249808..250788Ammonium transporter 2, putative
LOC_Os11g01420Os.9537.1.S1_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.9537.1.S1_s_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.24578.1.A1_at1/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01430OsAffx.18620.1.S1_at11/1111+254163..255783hypothetical protein
LOC_Os11g01430Os.23748.1.A1_at6/1111+254163..255783hypothetical protein
LOC_Os11g01450NANA11+261625..263495phosphatidate cytidylyltransferase family protein, expressed
LOC_Os11g01460Os.52782.1.S1_at1/1111+268028..270933hypothetical protein
LOC_Os11g01470NANA11+271765..279565retrotransposon protein, putative, unclassified
LOC_Os11g01480Os.18448.1.S1_s_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01480OsAffx.30765.1.S1_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23748.1.A1_at--860--8851NONE
TGATGAACGCATTTAAGATACTACA
NONE
Os.23748.1.A1_at--215--4231Chr11:254714..254738 (25 bp)
CCGCTTGTTTCCTACTACTGAAGTA
LOC_Os11g01430
Os.23748.1.A1_at--816--9871NONE
TACTTGATCCCTGTTCCTTTTAATA
NONE
Os.23748.1.A1_at--1077--6371NONE
GATCCCTGTTCCTTTTAATATGTCA
NONE
Os.23748.1.A1_at--596--3853Chr11:254780..254804 (25 bp)
CTGAATTCTGAAGCCTTGCTCTTGT
LOC_Os11g01430
Os.23748.1.A1_at--157--8993Chr11:254788..254812 (25 bp)
TGAAGCCTTGCTCTTGTTAGATTGG
LOC_Os11g01430
Os.23748.1.A1_at--1110--4815Chr11:254797..254821 (25 bp)
GCTCTTGTTAGATTGGCTGATACCC
LOC_Os11g01430
Os.23748.1.A1_at--275--651NONE
ATGCAATTTCAGGTACATTTAGCCC
NONE
Os.23748.1.A1_at--439--9631NONE
TCAGGTACATTTAGCCCTTTGTAAA
NONE
Os.23748.1.A1_at--697--5912Chr11:254934..254958 (25 bp)
GAGCTCAAGTGTTTGGAACAAGCAT
LOC_Os11g01430
Os.23748.1.A1_at--152--9811Chr11:254960..254984 (25 bp)
TAACTTGGTGAACTATGGCTAAATC
LOC_Os11g01430
Target Sequence 
TGATGAACGCATTTAAGATACTACATTAGGGAATTAAACCCCGCTTGTTTCCTACTACTGAAGTATGAAGAGATTACTTG
ATCCCTGTTCCTTTTAATATGTCATTCTGAATTCTGAAGCCTTGCTCTTGTTAGATTGGCTGATACCCCAGGCATCAAAA
GAGGACTAGAATCTCCTTCAGCATGGAAGTCCCCTTGGTTTGTAGATATGCAATTTCAGGTACATTTAGCCCTTTGTAAA
ATTTATGTATTTGAAATGCAGAGCTCAAGTGTTTGGAACAAGCATATAACTTGGTGAACTATGGCTAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23748.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis