Browse Element(s) Details


OsAffx.18620.1.S1_at

Description tigr:9639.m00043
TID=OsAffx.18620.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0143011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01370OsAffx.18618.1.S1_at10/1111+226459..230596expressed protein
LOC_Os11g01370Os.8201.1.S1_x_at4/1111+226459..230596expressed protein
LOC_Os11g01380OsAffx.18617.1.S1_at11/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01380Os.5886.1.S1_at8/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01390OsAffx.19445.1.S1_at11/1111+244190..244639EF hand family protein
LOC_Os11g01400OsAffx.31538.2.S1_x_at11/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.31538.2.S1_at10/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.21149.1.S1_x_at1/1111+246082..249718hypothetical protein
LOC_Os11g01410OsAffx.31539.2.S1_at11/1111+249808..250788Ammonium transporter 2, putative
LOC_Os11g01420Os.9537.1.S1_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.9537.1.S1_s_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.24578.1.A1_at1/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01430OsAffx.18620.1.S1_at11/1111+254163..255783hypothetical protein
LOC_Os11g01430Os.23748.1.A1_at6/1111+254163..255783hypothetical protein
LOC_Os11g01450NANA11+261625..263495phosphatidate cytidylyltransferase family protein, expressed
LOC_Os11g01460Os.52782.1.S1_at1/1111+268028..270933hypothetical protein
LOC_Os11g01470NANA11+271765..279565retrotransposon protein, putative, unclassified
LOC_Os11g01480Os.18448.1.S1_s_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01480OsAffx.30765.1.S1_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18620.1.S1_at--270--10714Chr11:254205..254229 (25 bp)
TTGCTCCTCGTCTGGTGGCCGATGA
LOC_Os11g01430
OsAffx.18620.1.S1_at--129--1951Chr11:254311..254335 (25 bp)
ACGGCCATGCGGTTGGCCCTGACCG
LOC_Os11g01430
OsAffx.18620.1.S1_at--430--7611Chr11:254335..254359 (25 bp)
GGGAAGGACCGAGCGCCACGGCGTC
LOC_Os11g01430
OsAffx.18620.1.S1_at--1006--2332Chr11:254396..254420 (25 bp)
AAAGAGAGCTCCAACCGAGCGTCAC
LOC_Os11g01430
OsAffx.18620.1.S1_at--696--3252Chr11:254407..254431 (25 bp)
CAACCGAGCGTCACGGCGTCGAGCT
LOC_Os11g01430
OsAffx.18620.1.S1_at--752--5611Chr11:254436..254460 (25 bp)
GACAAAGGCCGGCTGGGAGAGACGA
LOC_Os11g01430
OsAffx.18620.1.S1_at--1136--6491Chr11:255189..255213 (25 bp)
GATAGTAATAATGCGCAGACTGCTG
LOC_Os11g01430
OsAffx.18620.1.S1_at--632--7071Chr11:255193..255217 (25 bp)
GTAATAATGCGCAGACTGCTGCTGC
LOC_Os11g01430
OsAffx.18620.1.S1_at--51--4271Chr11:255700..255722 (23 bp)
CCGGCTGGGCCTGGGCATATGACAT
LOC_Os11g01430
OsAffx.18620.1.S1_at--882--3891Chr11:255702..255726 (25 bp)
CTGGGCCTGGGCATATGACATATCA
LOC_Os11g01430
OsAffx.18620.1.S1_at--1013--4471Chr11:255706..255730 (25 bp)
GCCTGGGCATATGACATATCAGCAT
LOC_Os11g01430
Target Sequence 
TTGCTCCTCGTCTGGTGGCCGATGATGGGTGATGCGGCGGCGACTTGGTGCGGCGCAGACGAGGATGGGGTCGGCGTCGA
GCCCGGGGGCAGACCAGGGCGAGGCGACGGCCATGCGGTTGGCCCTGACCGGGAAGGACCGAGCGCCACGGCGTCGAGAT
CCACCCCGCGCGCGACGGCGCCGAGAGAGGGAAAGAGAGCTCCAACCGAGCGTCACGGCGTCGAGCTCCCCGACAAAGGC
CGGCTGGGAGAGACGAGAGAGGAGGAGGGTTCATACTTCGTCAGCCCAGCTGATAGAACCTACGATGCGCTAAGATTGGT
GAAGCAGATAGTAATAATGCGCAGACTGCTGCTGCTTTGGCAGAAGCCCGGCTGGGCCTGGGCATATGACATATCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis