Browse Element(s) Details


OsAffx.19445.1.S1_at

Description tigr:9639.m00039
TID=OsAffx.19445.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EF hand, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0139011/11EF hand family protein
LOC_Os12g0140011/11EF hand family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01370OsAffx.18618.1.S1_at10/1111+226459..230596expressed protein
LOC_Os11g01370Os.8201.1.S1_x_at4/1111+226459..230596expressed protein
LOC_Os11g01380OsAffx.18617.1.S1_at11/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01380Os.5886.1.S1_at8/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01390OsAffx.19445.1.S1_at11/1111+244190..244639EF hand family protein
LOC_Os11g01400OsAffx.31538.2.S1_x_at11/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.31538.2.S1_at10/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.21149.1.S1_x_at1/1111+246082..249718hypothetical protein
LOC_Os11g01410OsAffx.31539.2.S1_at11/1111+249808..250788Ammonium transporter 2, putative
LOC_Os11g01420Os.9537.1.S1_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.9537.1.S1_s_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.24578.1.A1_at1/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01430OsAffx.18620.1.S1_at11/1111+254163..255783hypothetical protein
LOC_Os11g01430Os.23748.1.A1_at6/1111+254163..255783hypothetical protein
LOC_Os11g01450NANA11+261625..263495phosphatidate cytidylyltransferase family protein, expressed
LOC_Os11g01460Os.52782.1.S1_at1/1111+268028..270933hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19445.1.S1_at--702--2892Chr12:259952..259976 (25 bp)
AAGGTGTCCGCGTCCGAGCTGCGGG
LOC_Os12g01400
OsAffx.19445.1.S1_at--292--5752Chr12:259847..259871 (25 bp)
GACGGCTTGCTGGACCACCACGAGT
LOC_Os12g01400
OsAffx.19445.1.S1_at--612--8292Chr12:259844..259868 (25 bp)
GGCTTGCTGGACCACCACGAGTTCA
LOC_Os12g01400
OsAffx.19445.1.S1_at--880--3372Chr12:259832..259856 (25 bp)
CACCACGAGTTCATGAGGCTCTCTG
LOC_Os12g01400
OsAffx.19445.1.S1_at--783--1872Chr12:259828..259852 (25 bp)
ACGAGTTCATGAGGCTCTCTGCTGC
LOC_Os12g01400
OsAffx.19445.1.S1_at--152--1232Chr12:259825..259849 (25 bp)
AGTTCATGAGGCTCTCTGCTGCTCA
LOC_Os12g01400
OsAffx.19445.1.S1_at--18--9492Chr12:259811..259835 (25 bp)
TCTGCTGCTCATCAGTTGCAGGAGC
LOC_Os12g01400
OsAffx.19445.1.S1_at--847--1232Chr12:259798..259822 (25 bp)
AGTTGCAGGAGCCAGCGGAGGAGAG
LOC_Os12g01400
OsAffx.19445.1.S1_at--1141--4672Chr12:259784..259808 (25 bp)
GCGGAGGAGAGCCTAAGGTGCCTGA
LOC_Os12g01400
OsAffx.19445.1.S1_at--621--4432Chr12:259774..259798 (25 bp)
GCCTAAGGTGCCTGAGGGAGGCGTT
LOC_Os12g01400
OsAffx.19445.1.S1_at--841--7692Chr12:259676..259700 (25 bp)
GGGTCAGAGCATCAGCGGCTGGAGA
LOC_Os12g01400
Target Sequence 
AAGGTGTCCGCGTCCGAGCTGCGGGGCTGCATGGCGGCGGCGCTCGGGGAGGAGGTNTCCGAGGAGGAGGCGGCGGCGAT
CCTCGCAACGGCCGACACCGACGGCGACGGCTTGCTGGACCACCACGAGTTCATGAGGCTCTCTGCTGCTCATCAGTTGC
AGGAGCCAGCGGAGGAGAGCCTAAGGTGCCTGAGGGAGGCGTTCGACATGTACGCGGAGGAGGAGGAGACGGCGGTGATC
ACGCCGGCGAGCCTGCGGCGGATGCTGAGGCGGCTGGGGTCAGAGCATCAGCGGCTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis