Browse Element(s) Details


Os.24578.1.A1_at

Description gb:CA762104
DB_XREF= gi:25806143
DB_XREF=BR060007A20D03.ab1
CLONE=BR060007A20D03.ab1
TID=Os.24578.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24578 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177177.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g220705/11expressed protein
LOC_Os12g014301/11ribosomal protein L10 containing protein
LOC_Os11g014201/11ribosomal protein L10 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22030Os.53479.1.S1_x_at1/112+13101419..13104476retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22040OsAffx.20387.1.S1_x_at1/112+13105122..13109885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22050NANA2+13112205..13114807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22060Os.10001.1.S1_at11/112+13119920..13127002expressed protein
LOC_Os02g22060Os.17662.1.S1_at1/112+13119920..13127002expressed protein
LOC_Os02g22070OsAffx.2716.1.S1_at8/112+13127053..13132578expressed protein
LOC_Os02g22070Os.24578.1.A1_at5/112+13127053..13132578expressed protein
LOC_Os02g22080NANA2+13133206..13137031transposon protein, putative, Mutator sub-class
LOC_Os02g22090Os.22916.1.A1_at11/112+13144842..13149932Pattern formation protein EMB30, putative, expressed
LOC_Os02g22100Os.11736.1.S1_at10/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22100Os.51832.1.S1_at1/112+13156591..13164106Rhomboid family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003676molecular_functionnucleic acid binding
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24578.1.A1_at--269--5511NONE
GAAAAACATCCCCAAGGCCCTGAAT
NONE
Os.24578.1.A1_at--172--9291NONE
TCCCCAAGGCCCTGAATCTTGCTTT
NONE
Os.24578.1.A1_at--558--7531Chr02:13132352..13132376 (25 bp)
GTGGCAGCAAGCTGAATGACAAATT
LOC_Os02g22070
Os.24578.1.A1_at--249--2451Chr02:2464406..2464428 (22 bp)
AACAACCTTTGAGATAGAGAACTTC
NONE
Os.24578.1.A1_at--631--10111Chr02:13132418..13132442 (25 bp)
TATGGTGTGCTATGAACACATTGGC
LOC_Os02g22070
Os.24578.1.A1_at--309--5512Chr12:267124..267148 (24 bp)
GAACACATTGGCAATCCTATGTCTT
LOC_Os12g01430
Os.24578.1.A1_at--265--8231NONE
GGCAATCCTATGTCTTGATTCTTTA
NONE
Os.24578.1.A1_at--575--2871NONE
AAGTGGCTTAGAAATAGCACGGAAT
NONE
Os.24578.1.A1_at--959--2991Chr02:13132481..13132505 (25 bp)
AATGATAGGCTAGGCTCTGGTCTTC
LOC_Os02g22070
Os.24578.1.A1_at--397--8311Chr02:13132488..13132512 (25 bp)
GGCTAGGCTCTGGTCTTCTTTTATT
LOC_Os02g22070
Os.24578.1.A1_at--99--10331Chr02:13132513..13132537 (25 bp)
TTTCTTCCACATATATACATTTCAA
LOC_Os02g22070
Target Sequence 
GAAAAACATCCCCAAGGCCCTGAATCTTGCTTTCAAGGGATTTCCAGGCCTGGTAAATATTGAGCCAGCGGTTTCTGCAA
ACAAGAAGACTCGTGATCCTATATGCAAGGGTTTTGCCTATCTTAAACTGGAATCTGTGGAGGCTGCTACCAGGTTTGTT
GAACTATACTCCCAGAAAGCTGTGTCATTCGGCAAGGTTCAGAAGCCGATCAGGTGCTGTATTGTTGATTCACAAAGCTC
TGTTGACTCCCAAAATCAACCATCCAGTGGTCAGGCAATCCGTCAACCCGGGTTGATGGCCAAAAATCGGGTGGCAGCAA
GCTGAATGACAAATTGATCTGTCAGTAACAACCTTTGAGATAGAGAACTTCATGTATATGGTGTGCTATGAACACATTGG
CAATCCTATGTCTTGATTCTTTAAGTGGCTTAGAAATAGCACGGAATGATAGGCTAGGCTCTGGTCTTCTTTTATTTTTC
TTCCACATATATACATTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24578.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis