Browse Element(s) Details


Os.10001.1.S1_at

Description gb:AK102973.1
DB_XREF= gi:32988182
TID=Os.10001.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115K18, full insert sequence.
FL= gb:AK102973.1 gb:AK059937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2206011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22020Os.51945.1.S1_at10/112+13096084..13098214expressed protein
LOC_Os02g22030Os.53479.1.S1_x_at1/112+13101419..13104476retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22040OsAffx.20387.1.S1_x_at1/112+13105122..13109885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22050NANA2+13112205..13114807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22060Os.10001.1.S1_at11/112+13119920..13127002expressed protein
LOC_Os02g22060Os.17662.1.S1_at1/112+13119920..13127002expressed protein
LOC_Os02g22070OsAffx.2716.1.S1_at8/112+13127053..13132578expressed protein
LOC_Os02g22070Os.24578.1.A1_at5/112+13127053..13132578expressed protein
LOC_Os02g22080NANA2+13133206..13137031transposon protein, putative, Mutator sub-class
LOC_Os02g22090Os.22916.1.A1_at11/112+13144842..13149932Pattern formation protein EMB30, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10001.1.S1_at--145--6851Chr02:13123137..13123160 (24 bp)
GTTTCCATCATACTCTGCTCAATTA
LOC_Os02g22060
Os.10001.1.S1_at--1143--7351Chr02:13120419..13120443 (25 bp)
GTGAACACGATTCCTTCCATGGATG
LOC_Os02g22060
Os.10001.1.S1_at--12--10131Chr02:13120393..13120413 (21 bp)
TATGTACTCTTTGGAACGCTGCTTC
LOC_Os02g22060
Os.10001.1.S1_at--1006--1831Chr02:13120301..13120398 (25 bp)
ACGCTGCTTCTACTCAACTGTGGAT
LOC_Os02g22060
Os.10001.1.S1_at--1025--9831Chr02:13120222..13120246 (25 bp)
TAAAGCCTTCATTGAGACCTCCAAG
LOC_Os02g22060
Os.10001.1.S1_at--119--1051Chr02:13120163..13120187 (25 bp)
AGTGGCAACTTACTCCTTTGTACCT
LOC_Os02g22060
Os.10001.1.S1_at--671--10211Chr02:13120147..13120171 (25 bp)
TTTGTACCTTGTGCGCTGACTGAAA
LOC_Os02g22060
Os.10001.1.S1_at--852--2371Chr02:13120125..13120149 (25 bp)
AAACCGGAGCATTCAGTGTCACAAT
LOC_Os02g22060
Os.10001.1.S1_at--420--5191Chr02:13120065..13120089 (25 bp)
GAATTCGTCCCCTGCAAAATGATAA
LOC_Os02g22060
Os.10001.1.S1_at--814--8451Chr02:13120023..13120047 (25 bp)
TGGCCATGGTACATCCTAGATCTGT
LOC_Os02g22060
Os.10001.1.S1_at--187--6411Chr02:13120005..13120029 (25 bp)
GATCTGTAGGTCTTCTTTTCTAACG
LOC_Os02g22060
Target Sequence 
GTTTCCATCATACTCTGCTCAATTACCCGGGCTCTAGGGGCTTGTGGNTACGTTTTATTGTCGTCATTTCTGATAAGAGA
GAATATTCTTGGATTGATAACAGTCAATATACATGCTTCCCTGACATACATTCTGGCGGCAGCTGGGGTGAACACGATTC
CTTCCATGGATGCAATTTATGTACTCTTTGGAACGCTGCTTCTACTCAACTGTGGATTCTTTATCTTCCTACTACATATA
ATGTATACAATATTCCTGACTAAGCTCGGAATAAAGCCTTCATTGAGACCTCCAAGATGGCTGGACAAAGCAATTTGAGT
TTACAGGTAGAGTGGCAACTTACTCCTTTGTACCTTGTGCGCTGACTGAAACCGGAGCATTCAGTGTCACAATGCTTCCT
AATGTAGATTCCGCAGAGTGTCAGCGCTGAATTCGTCCCCTGCAAAATGATAATTAGTGTCCTTTTTCTTTGGCCATGGT
ACATCCTAGATCTGTAGGTCTTCTTTTCTAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis