Browse Element(s) Details


Os.51945.1.S1_at

Description gb:AK101809.1
DB_XREF= gi:32987018
TID=Os.51945.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033066M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066M05, full insert sequence.
FL= gb:AK101809.1 gb:AK064355.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2202010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21980NANA2+13068447..13075373retrotransposon, putative, centromere-specific
LOC_Os02g21990NANA2+13076893..13077966retrotransposon, putative, centromere-specific
LOC_Os02g22000OsAffx.24379.1.S1_at9/112+13081998..13085777phosphoglycerate mutase family protein
LOC_Os02g22010OsAffx.2715.1.S1_at11/112+13093976..13094245hypothetical protein
LOC_Os02g22020Os.51945.1.S1_at10/112+13096084..13098214expressed protein
LOC_Os02g22030Os.53479.1.S1_x_at1/112+13101419..13104476retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22040OsAffx.20387.1.S1_x_at1/112+13105122..13109885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22050NANA2+13112205..13114807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22060Os.10001.1.S1_at11/112+13119920..13127002expressed protein
LOC_Os02g22060Os.17662.1.S1_at1/112+13119920..13127002expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51945.1.S1_at--436--10131Chr02:13097647..13097671 (25 bp)
TATCGTCTACACACGAGGAGGCCGA
LOC_Os02g22020
Os.51945.1.S1_at--185--7211Chr02:13097734..13097758 (25 bp)
GTCGTCGGGAGCATCTGGGTACCCC
LOC_Os02g22020
Os.51945.1.S1_at--1109--5171Chr02:13097816..13097840 (25 bp)
GCAATAATGCGTCCGGGAGCGCCAA
LOC_Os02g22020
Os.51945.1.S1_at--348--4951Chr02:13097886..13097910 (25 bp)
GCATTCGCATCGGAAGCAGCACCAG
LOC_Os02g22020
Os.51945.1.S1_at--33--951Chr02:13097922..13097946 (25 bp)
AGGACAGAGACATTCCGGGTCGGAA
LOC_Os02g22020
Os.51945.1.S1_at--589--5851Chr02:13098012..13098036 (25 bp)
GACCACCTCCGCTTGATTAGTGTAG
LOC_Os02g22020
Os.51945.1.S1_at--769--6991Chr02:13098060..13098084 (25 bp)
GTACGTAGTACGAGAGTGCATCACA
LOC_Os02g22020
Os.51945.1.S1_at--36--7331Chr02:13098075..13098099 (25 bp)
GTGCATCACATCAAAGTGCAGCTTG
LOC_Os02g22020
Os.51945.1.S1_at--946--1951Chr02:13098136..13098160 (25 bp)
ACTGATTGCTTCGTGATCGCACACA
LOC_Os02g22020
Os.51945.1.S1_at--11--5131Chr02:13098154..13098178 (25 bp)
GCACACACCACATTTGCTGTTTTGT
LOC_Os02g22020
Os.51945.1.S1_at--515--8151Chr02:13098213..13098238 (25 bp)
GGAAACTCCATAGACATTTTCTCCC
NONE
Target Sequence 
TATCGTCTACACACGAGGAGGCCGAGCTCGACGGGGCAGAGCAGCGCCGCAGCCGGCGTCCCCGCCCCGCCTGCGCCGCA
GTTCGTCGTCGTCGGGAGCATCTGGGTACCCCCGCCGGAATACGCTGCCGCGGCCGCCGCACAGCAGCACGTGCAGCTTG
CCGCCGCCGGCAATAATGCGTCCGGGAGCGCCAACCCCGTGTACGCTCCGGTGGCGATGNTGCCGGCAGGCTTGCAGCCG
CATTCGCATCGGAAGCAGCACCAGCAGCAGCAGCAAGGACAGAGACATTCCGGGTCGGAAGNCCGGCGGAGCGGGGACGC
CGGCGATGGCAGCTCGTCCTCCCCGGCCGTCTCGTCGTCGTCGCAGACCACCTCCGCTTGATTAGTGTAGATTCGTCGAT
TACATCATTATATGTACGTAGTACGAGAGTGCATCACATCAAAGTGCAGCTTGATTTTGGAGCTAGCTAGCTTAAATTAA
GGGTTAATTACTGATTGCTTCGTGATCGCACACACCACATTTGCTGTTTTGTTTGTAAAAAAGATAATAAAATACATAAA
TATTAAGGAAACTCCATAGACATTTTCTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis