Browse Element(s) Details


OsAffx.2715.1.S1_at

Description tigr:9630.m02114
TID=OsAffx.2715.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2201011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21980NANA2+13068447..13075373retrotransposon, putative, centromere-specific
LOC_Os02g21990NANA2+13076893..13077966retrotransposon, putative, centromere-specific
LOC_Os02g22000OsAffx.24379.1.S1_at9/112+13081998..13085777phosphoglycerate mutase family protein
LOC_Os02g22010OsAffx.2715.1.S1_at11/112+13093976..13094245hypothetical protein
LOC_Os02g22020Os.51945.1.S1_at10/112+13096084..13098214expressed protein
LOC_Os02g22030Os.53479.1.S1_x_at1/112+13101419..13104476retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22040OsAffx.20387.1.S1_x_at1/112+13105122..13109885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22050NANA2+13112205..13114807retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2715.1.S1_at--1067--1911Chr02:13094034..13094058 (25 bp)
ACGGTGGCGGCTGCACTGGACAAAG
LOC_Os02g22010
OsAffx.2715.1.S1_at--70--9031Chr02:13094045..13094069 (25 bp)
TGCACTGGACAAAGGCGGCGCCGGC
LOC_Os02g22010
OsAffx.2715.1.S1_at--73--4571Chr02:13094062..13094086 (25 bp)
GCGCCGGCAGACAGACGTGACGAAC
LOC_Os02g22010
OsAffx.2715.1.S1_at--205--8271Chr02:13094067..13094091 (25 bp)
GGCAGACAGACGTGACGAACGCAAT
LOC_Os02g22010
OsAffx.2715.1.S1_at--339--1851Chr02:13094081..13094105 (25 bp)
ACGAACGCAATGGATGAGCTGTGGA
LOC_Os02g22010
OsAffx.2715.1.S1_at--76--4731Chr02:13094098..13094122 (25 bp)
GCTGTGGAGGAAAAACACAACGATC
LOC_Os02g22010
OsAffx.2715.1.S1_at--228--2451Chr02:13094111..13094135 (25 bp)
AACACAACGATCGTGGTGGACCAAG
LOC_Os02g22010
OsAffx.2715.1.S1_at--325--1891Chr02:13094117..13094141 (25 bp)
ACGATCGTGGTGGACCAAGGGCAAA
LOC_Os02g22010
OsAffx.2715.1.S1_at--90--8371Chr02:13094142..13094166 (25 bp)
GGCGGTGGCCAACGCGAGCGAGGGC
LOC_Os02g22010
OsAffx.2715.1.S1_at--405--4491Chr02:13094176..13094200 (25 bp)
GCCGGACATGGGTTGCGCGATGGAT
LOC_Os02g22010
OsAffx.2715.1.S1_at--535--4571Chr02:13094190..13094214 (25 bp)
GCGCGATGGATGTGGTCGCAGCCGA
LOC_Os02g22010
Target Sequence 
ACGGTGGCGGCTGCACTGGACAAAGGCGGCGCCGGCAGACAGACGTGACGAACGCAATGGATGAGCTGTGGAGGAAAAAC
ACAACGATCGTGGTGGACCAAGGGCAAAGGCGGTGGCCAACGCGAGCGAGGGCGGCGGCCAAGCCGGACATGGGTTGCGC
GATGGATGTGGTCGCAGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis