Browse Element(s) Details


Os.17662.1.S1_at

Description gb:AK105808.1
DB_XREF= gi:32991017
TID=Os.17662.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B09, full insert sequence.
FL= gb:AK105808.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1277011/11amino acid transporter family protein, putative, expressed
LOC_Os02g220601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12750NANA7+7288259..7288909hypothetical protein
LOC_Os07g12760OsAffx.16233.1.S1_x_at11/117+7292031..7292345hypothetical protein
LOC_Os07g12770Os.17662.1.S1_at11/117+7308692..7311352amino acid transporter family protein, putative, expressed
LOC_Os07g12780Os.27806.1.S1_at11/117+7311856..7313047expressed protein
LOC_Os07g12790OsAffx.5305.1.S1_at11/117+7315383..7315888expressed protein
LOC_Os07g12800Os.27156.1.S1_at11/117+7319840..7322092expressed protein
LOC_Os07g12810OsAffx.16234.1.S1_x_at11/117+7322579..7327621expressed protein
LOC_Os07g12810Os.54473.1.S1_at10/117+7322579..7327621expressed protein
LOC_Os07g12820OsAffx.16235.1.S1_at11/117+7331590..7332536B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015171molecular_functionamino acid transporter activity
GO:0015173molecular_functionaromatic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17662.1.S1_at--372--2971Chr07:7310790..7310814 (25 bp)
AATGGGTGGGCCTGCACTCAAGCCG
LOC_Os07g12770
Os.17662.1.S1_at--322--4211Chr07:7310812..7310836 (25 bp)
CCGCATCGTCATGGTAACTATCCTG
LOC_Os07g12770
Os.17662.1.S1_at--959--9811Chr07:7310826..7310850 (25 bp)
TAACTATCCTGTCTGTGGTGGCATC
LOC_Os07g12770
Os.17662.1.S1_at--336--8631Chr07:7310841..7310865 (25 bp)
TGGTGGCATCCTTCATACCTGCGTT
LOC_Os07g12770
Os.17662.1.S1_at--375--10551Chr07:7310873..7310897 (25 bp)
TTCATCTCCTTTGTCGGGAGCACGG
LOC_Os07g12770
Os.17662.1.S1_at--978--471Chr07:7310937..7310961 (25 bp)
ATCTGAGCATTGTGGGTTCCTCGAT
LOC_Os07g12770
Os.17662.1.S1_at--857--7851Chr07:7311011..7311035 (25 bp)
GGTTTTGCGGGCTACGGGCTCATTA
LOC_Os07g12770
Os.17662.1.S1_at--597--3771Chr07:7311039..7311063 (25 bp)
CTCTCTTCTCACATTGACTGATGAT
LOC_Os07g12770
Os.17662.1.S1_at--47--6272Chr07:7311146..7311170 (25 bp)
GATGTATTTACTGCCTTTGTTGTTC
LOC_Os07g12770
Os.17662.1.S1_at--1121--731Chr07:7311239..7311263 (25 bp)
ATGTATATTACCAGTGTCACGCAGT
LOC_Os07g12770
Os.17662.1.S1_at--81--7111Chr07:7311254..7311278 (25 bp)
GTCACGCAGTGACGCAATGGATCAT
LOC_Os07g12770
Target Sequence 
AATGGGTGGGCCTGCACTCAAGCCGCATCGTCATGGTAACTATCCTGTCTGTGGTGGCATCCTTCATACCTGCGTTCGGG
TCCTTCATCTCCTTTGTCGGGAGCACGGTTTGCGCGCTGCTCTCCTTCGTGCTGCCTACGATCTTCCATCTGAGCATTGT
GGGTTCCTCGATGAGNCCGTGGCGACNCTGGGNGGACTANGGTTTCCTTCTCTTCGGCCTTGGTTTTGCGGGCTACGGGC
TCATTANGGCTCTCTTCTCACATTGACTGATGATCCAAATGGCAAAGAACCACAATGCAGGATTCAACTGCAGAATATGT
CCAATCTGGGAAGTGGGAACGAAGGCATTGAGATGAGATGTATTTACTGCCTTTGTTGTTCANNGTGTAATATATGTGAT
GCCAAGATCTAGGATTATGNGATAATGATCTTTTGTTGGTGTAAGTTATATGTATATTACCAGTGTCACGCAGTGACGCA
ATGGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis