Browse Element(s) Details


Os.54473.1.S1_at

Description gb:AK105271.1
DB_XREF= gi:32990480
TID=Os.54473.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G02, full insert sequence.
FL= gb:AK105271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1281010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12770Os.17662.1.S1_at11/117+7308692..7311352amino acid transporter family protein, putative, expressed
LOC_Os07g12780Os.27806.1.S1_at11/117+7311856..7313047expressed protein
LOC_Os07g12790OsAffx.5305.1.S1_at11/117+7315383..7315888expressed protein
LOC_Os07g12800Os.27156.1.S1_at11/117+7319840..7322092expressed protein
LOC_Os07g12810OsAffx.16234.1.S1_x_at11/117+7322579..7327621expressed protein
LOC_Os07g12810Os.54473.1.S1_at10/117+7322579..7327621expressed protein
LOC_Os07g12820OsAffx.16235.1.S1_at11/117+7331590..7332536B3 DNA binding domain containing protein
LOC_Os07g12830Os.18445.1.S1_at11/117+7346107..7349941Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54473.1.S1_at--947--5591Chr07:7322977..7323001 (25 bp)
GAAATTACGTTTCCGTCATGATGAA
LOC_Os07g12810
Os.54473.1.S1_at--1135--7991Chr07:7322939..7322963 (25 bp)
GGATGGGCTCAGATGACACCTCGTA
LOC_Os07g12810
Os.54473.1.S1_at--12--9411Chr07:7322924..7322943 (20 bp)
TCGTAGTGCCATGGCTTCTGAGCAG
LOC_Os07g12810
Os.54473.1.S1_at--782--3491Chr07:7322797..7322934 (25 bp)
CATGGCTTCTGAGCAGTCTGGATGT
LOC_Os07g12810
Os.54473.1.S1_at--602--51Chr07:7322724..7322748 (25 bp)
ATTGTTGTAGATTTGTCCTTTGGTC
LOC_Os07g12810
Os.54473.1.S1_at--275--7251Chr07:7322710..7322734 (25 bp)
GTCCTTTGGTCTATCCATCAAGCGA
LOC_Os07g12810
Os.54473.1.S1_at--1085--6451Chr07:7322687..7322711 (25 bp)
GATATAATTTGGTTACACAGTAGCT
LOC_Os07g12810
Os.54473.1.S1_at--500--10451Chr07:7322616..7322640 (25 bp)
TTAGCAGACCAGTATTTTTATCCTT
LOC_Os07g12810
Os.54473.1.S1_at--255--10371Chr07:7322601..7322625 (25 bp)
TTTTATCCTTGGTTCCTGAGTGCGA
LOC_Os07g12810
Os.54473.1.S1_at--870--10851Chr07:7322593..7322617 (25 bp)
TTGGTTCCTGAGTGCGAATGACGGC
LOC_Os07g12810
Os.54473.1.S1_at--1014--4071Chr07:7322579..7322603 (25 bp)
CGAATGACGGCAGAGTTAGTCGTTT
NONE
Target Sequence 
GAAATTACGTTTCCGTCATGATGAAGACTGATAGGATAGGATGGGCTCAGATGACACCTCGTAGTGCCATGGCTTCTGAG
CAGTCTGGATGTTTTGCTTGTGTTCTGTCATGCTGCTGATACTAGTTGCAAGGTGGGGAGATTGTTGTAGATTTGTCCTT
TGGTCTATCCATCAAGCGATATAATTTGGTTACACAGTAGCTTTAATGTAAAATGGGGTTCTGAATTCTTTTTTTTTTCT
AAATATTTTTAGCAGACCAGTATTTTTATCCTTGGTTCCTGAGTGCGAATGACGGCAGAGTTAGTCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis