Browse Element(s) Details


OsAffx.16235.1.S1_at

Description tigr:9635.m01262
TID=OsAffx.16235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1282011/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12770Os.17662.1.S1_at11/117+7308692..7311352amino acid transporter family protein, putative, expressed
LOC_Os07g12780Os.27806.1.S1_at11/117+7311856..7313047expressed protein
LOC_Os07g12790OsAffx.5305.1.S1_at11/117+7315383..7315888expressed protein
LOC_Os07g12800Os.27156.1.S1_at11/117+7319840..7322092expressed protein
LOC_Os07g12810OsAffx.16234.1.S1_x_at11/117+7322579..7327621expressed protein
LOC_Os07g12810Os.54473.1.S1_at10/117+7322579..7327621expressed protein
LOC_Os07g12820OsAffx.16235.1.S1_at11/117+7331590..7332536B3 DNA binding domain containing protein
LOC_Os07g12830Os.18445.1.S1_at11/117+7346107..7349941Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os07g12840NANA7+7356513..7360612retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16235.1.S1_at--832--2111Chr07:7332328..7332352 (25 bp)
ACATGGCTTGAAGATCCGCGTCAAA
LOC_Os07g12820
OsAffx.16235.1.S1_at--541--5091Chr07:7332294..7332318 (25 bp)
GCACGTGACAAGCTGTACATGACAA
LOC_Os07g12820
OsAffx.16235.1.S1_at--834--3051Chr07:7332218..7332242 (25 bp)
AATCTGTTGTTTTCAGGACCTTATC
LOC_Os07g12820
OsAffx.16235.1.S1_at--275--1631Chr07:7332127..7332151 (25 bp)
AGCGGCCAAGGCACTTATCAATAAC
LOC_Os07g12820
OsAffx.16235.1.S1_at--381--3091Chr07:7332108..7332132 (25 bp)
AATAACCAATCATCTTCTGCACCAA
LOC_Os07g12820
OsAffx.16235.1.S1_at--404--9471Chr07:7332093..7332117 (25 bp)
TCTGCACCAAGCTTTTCAACCAAAT
LOC_Os07g12820
OsAffx.16235.1.S1_at--168--10511Chr07:7332079..7332103 (25 bp)
TTCAACCAAATCAACTGCGCCTCGT
LOC_Os07g12820
OsAffx.16235.1.S1_at--981--7071Chr07:7332056..7332080 (25 bp)
GTCATCCATCTTTTACCAACGTTGA
LOC_Os07g12820
OsAffx.16235.1.S1_at--1060--2171Chr07:7331925..7331949 (25 bp)
ACACATCCAACTCAGGTTCAAGCAC
LOC_Os07g12820
OsAffx.16235.1.S1_at--39--5091Chr07:7331904..7331928 (25 bp)
GCACCATACTGGATCAACTTCTACA
LOC_Os07g12820
OsAffx.16235.1.S1_at--946--6511Chr07:7331688..7331712 (25 bp)
GATATTGCACAATTCCTAGACTACT
LOC_Os07g12820
Target Sequence 
ACATGGCTTGAAGATCCGCGTCAAAGTAGCAGAAGCACGTGACAAGCTGTACATGACAATAGGATGGAAGGAATTCATAC
AAGAAGCTGGCTTAAAGATGGGAGAATCTAAATCTGTTGTTTTCAGGACCTTATCAAAATCAAGACTCAATGTGATCATA
TTTAACAAAGAAGGATATAGTAGATGTCCAATTCCAGATAAAGCGGCCAAGGCACTTATCAATAACCAATCATCTTCTGC
ACCAAGCTTTTCAACCAAATCAACTGCGCCTCGTCATCCATCTTTTACCAACGTTGAAGGTAGAGTCCACAAAACTAAAT
CACACAAAAACGAACACATCCAACTCAGGTTCAAGCACCATACTGGATCAACTTCTACAGCCAACACAAAACGCATTGTC
AAAGATATGTGCTGCTATAACAAACGGATGAAGCTATCAAGTGAAGTAAAGAACTACGTTAGAGATATTGCACAATTCCT
AGACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis