Browse Element(s) Details


OsAffx.5305.1.S1_at

Description tigr:9635.m01259
TID=OsAffx.5305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1279011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12760OsAffx.16233.1.S1_x_at11/117+7292031..7292345hypothetical protein
LOC_Os07g12770Os.17662.1.S1_at11/117+7308692..7311352amino acid transporter family protein, putative, expressed
LOC_Os07g12780Os.27806.1.S1_at11/117+7311856..7313047expressed protein
LOC_Os07g12790OsAffx.5305.1.S1_at11/117+7315383..7315888expressed protein
LOC_Os07g12800Os.27156.1.S1_at11/117+7319840..7322092expressed protein
LOC_Os07g12810OsAffx.16234.1.S1_x_at11/117+7322579..7327621expressed protein
LOC_Os07g12810Os.54473.1.S1_at10/117+7322579..7327621expressed protein
LOC_Os07g12820OsAffx.16235.1.S1_at11/117+7331590..7332536B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5305.1.S1_at--643--791Chr07:7315575..7315599 (25 bp)
ATGTGGATGCACAGTTGCCGGCGCG
LOC_Os07g12790
OsAffx.5305.1.S1_at--513--4511Chr07:7315655..7315679 (25 bp)
GCCGCCAGGTACAGGCTGTTCAGGA
LOC_Os07g12790
OsAffx.5305.1.S1_at--209--6671Chr07:7315672..7315696 (25 bp)
GTTCAGGAACAACTTCGTGGCGGCC
LOC_Os07g12790
OsAffx.5305.1.S1_at--88--5751Chr07:7315759..7315783 (25 bp)
GACGGTCGTCCCTAGGTACGTCTTG
LOC_Os07g12790
OsAffx.5305.1.S1_at--683--3691Chr07:7315770..7315794 (25 bp)
CTAGGTACGTCTTGCCTCTGCTCGT
LOC_Os07g12790
OsAffx.5305.1.S1_at--899--3771Chr07:7315785..7315809 (25 bp)
CTCTGCTCGTCATGTGCTGTGCAAC
LOC_Os07g12790
OsAffx.5305.1.S1_at--217--771Chr07:7315796..7315820 (25 bp)
ATGTGCTGTGCAACCGCGGAAGTCG
LOC_Os07g12790
OsAffx.5305.1.S1_at--1151--7331Chr07:7315803..7315827 (25 bp)
GTGCAACCGCGGAAGTCGTTCGCAA
LOC_Os07g12790
OsAffx.5305.1.S1_at--242--5331Chr07:7315814..7315838 (25 bp)
GAAGTCGTTCGCAACTATGTCCAGA
LOC_Os07g12790
OsAffx.5305.1.S1_at--465--6711Chr07:7315820..7315844 (25 bp)
GTTCGCAACTATGTCCAGATGTACG
LOC_Os07g12790
OsAffx.5305.1.S1_at--399--771Chr07:7315830..7315854 (25 bp)
ATGTCCAGATGTACGGGTGGTCTGT
LOC_Os07g12790
Target Sequence 
ATGTGGATGCACAGTTGCCGGCGCGTCGGGTGGCGGCGGCGGCGGAGCCGAAGCGAGCCCCCGGCGCCGACGCCTACGCC
GCCGCCAGGTACAGGCTGTTCAGGAACAACTTCGTGGCGGCCGCCGTCGCGGTGGCCCTGTGCCTCGGCGCGCTGGTCCA
CACCATCCTCTGCCGCGACGACCCGACGGTCGTCCCTAGGTACGTCTTGCCTCTGCTCGTCATGTGCTGTGCAACCGCGG
AAGTCGTTCGCAACTATGTCCAGATGTACGGGTGGTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis