Browse Element(s) Details


OsAffx.16234.1.S1_x_at

Description tigr:9635.m01261
TID=OsAffx.16234.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1281011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12770Os.17662.1.S1_at11/117+7308692..7311352amino acid transporter family protein, putative, expressed
LOC_Os07g12780Os.27806.1.S1_at11/117+7311856..7313047expressed protein
LOC_Os07g12790OsAffx.5305.1.S1_at11/117+7315383..7315888expressed protein
LOC_Os07g12800Os.27156.1.S1_at11/117+7319840..7322092expressed protein
LOC_Os07g12810OsAffx.16234.1.S1_x_at11/117+7322579..7327621expressed protein
LOC_Os07g12810Os.54473.1.S1_at10/117+7322579..7327621expressed protein
LOC_Os07g12820OsAffx.16235.1.S1_at11/117+7331590..7332536B3 DNA binding domain containing protein
LOC_Os07g12830Os.18445.1.S1_at11/117+7346107..7349941Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16234.1.S1_x_at--102--7391Chr07:7324878..7324902 (25 bp)
GTGACCACTACATGTTTCTGAGCTG
LOC_Os07g12810
OsAffx.16234.1.S1_x_at--1036--6231Chr07:7324716..7324740 (25 bp)
GATGGCAATCTATTGTAGCCCCTAT
LOC_Os07g12810
OsAffx.16234.1.S1_x_at--11--4311Chr07:7324696..7324720 (25 bp)
CCTATCCTGCTGTTACTTCAATTTC
LOC_Os07g12810
OsAffx.16234.1.S1_x_at--848--631Chr07:7323918..7323975 (24 bp)
ATGCAGTTCAATCAGGTTGCTCGCC
LOC_Os07g12810
OsAffx.16234.1.S1_x_at--1083--10831Chr07:7323881..7323905 (25 bp)
TTGGTGTCAGAACAATAGCGCTGTT
LOC_Os07g12810
OsAffx.16234.1.S1_x_at--177--291Chr07:7323729..7323749 (21 bp)
ATAGGGTGTATAATCCTGTCGCCGA
LOC_Os07g12810
OsAffx.16234.1.S1_x_at--49--3891Chr07:7323714..7323738 (25 bp)
CTGTCGCCGAGGATCTTGGGATAAA
LOC_Os07g12810
OsAffx.16234.1.S1_x_at--68--5311Chr07:7323659..7323683 (25 bp)
GAAGGGTGCTCTAACGTTACCTGAG
LOC_Os07g12810
OsAffx.16234.1.S1_x_at--630--6551Chr07:7323562..7323586 (25 bp)
GATTATCTTCTATTACTTGGCTGGG
LOC_Os07g12810
OsAffx.16234.1.S1_x_at--600--1311Chr07:7323168..7323192 (25 bp)
AGATGTCACACTGCCTGTTAGATTC
LOC_Os07g12810
OsAffx.16234.1.S1_x_at--107--3911Chr07:7322780..7322804 (25 bp)
CTGGATGTTTTGCTTGTGTTCTGTC
LOC_Os07g12810
Target Sequence 
GTGACCACTACATGTTTCTGAGCTGTGACATCCCTGAGGGTGGGAATGAAGGAATGGTGATTGACAATGATGGTGTAGTT
AGAGGGATGGCAATCTATTGTAGCCCCTATCCTGCTGTTACTTCAATTTCTACTATTGTAAAATGCATTGACATGTTTAT
GCAGTTCAATCAGGTTGCTCGCCCCCTTTTTGGTATTGGTGTCAGAACAATAGCGCTGTTGGATGTGCAGCTTCAGGAGG
ATATCAGTGACTTTGGCATCAAGGGTGGTTTCCTTGTAGATAGGGTGTATAATCCTGTCGCCGAGGATCTTGGGATAAAG
CGTGGTAATGTAATTACTTCTATAAATGGGAAGGGTGCTCTAACGTTACCTGAGCTGGAAGATTATCTTCTATTACTTGG
CTGGGGTTATTTGGAGGACAAACTAAATTGCATTAAAGATATCAAGCTTAGAGTTTGTGATCTCAAGAGTGGTGTGGAAA
TAGATGTCACACTGCCTGTTAGATTCTATGATAAATCTGAGAGGAGCAGTCTGGATGTTTTGCTTGTGTTCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16234.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis