Browse Element(s) Details


Os.5886.1.S1_at

Description gb:AK058259.1
DB_XREF= gi:32968277
TID=Os.5886.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-012-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E12, full insert sequence.
FL= gb:AK058259.1 gb:AK058226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0139011/11Clathrin heavy chain, putative, expressed
LOC_Os11g013808/11Clathrin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01360Os.7309.1.S1_at11/1112+219457..224793expressed protein
LOC_Os12g01360Os.7309.2.S1_at10/1112+219457..224793expressed protein
LOC_Os12g01370Os.152.1.S1_at11/1112+225239..229184Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os12g01380Os.8201.1.S1_at11/1112+241968..246389expressed protein
LOC_Os12g01380Os.8201.1.S1_x_at11/1112+241968..246389expressed protein
LOC_Os12g01380OsAffx.18618.1.S1_at10/1112+241968..246389expressed protein
LOC_Os12g01390Os.5886.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01390OsAffx.18617.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01400OsAffx.19445.1.S1_at11/1112+259581..260030EF hand family protein
LOC_Os12g01410OsAffx.31538.1.S1_at11/1112+262452..264165hypothetical protein
LOC_Os12g01420OsAffx.31539.1.S1_at11/1112+264610..265986Ammonium Transporter family protein
LOC_Os12g01430Os.9537.1.S1_s_at5/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.7454.1.S1_at2/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.53113.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.24713.1.S1_x_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.24578.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01449Os.11394.1.S1_at11/1112+272634..281070expressed protein
LOC_Os12g01449OsAffx.28164.2.S1_at1/1112+272634..281070expressed protein
LOC_Os12g01449Os.46481.2.S1_x_at1/1112+272634..281070expressed protein
LOC_Os12g01470NANA12+282777..287007retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5886.1.S1_at--320--811Chr12:258342..258366 (25 bp)
ATGGGTCCTGGACCTATGCCAGCAT
LOC_Os12g01390
Os.5886.1.S1_at--974--7652Chr12:258369..258393 (25 bp)
GGGATGCCTCCAATGGGAAGCTACT
LOC_Os12g01390
Os.5886.1.S1_at--323--8191Chr12:258384..258408 (25 bp)
GGAAGCTACTGAGTTATCATCCACT
LOC_Os12g01390
Os.5886.1.S1_at--1103--7352Chr12:258532..258556 (25 bp)
GTGAAATCTCTAGCCAGGTCGAGTT
LOC_Os12g01390
Os.5886.1.S1_at--840--1031Chr12:258547..258571 (25 bp)
AGGTCGAGTTAATTGCTGGTTGCTA
LOC_Os12g01390
Os.5886.1.S1_at--363--5892Chr12:258625..258649 (25 bp)
GAGCTGCAAAGGCTGGTACCATTAT
LOC_Os12g01390
Os.5886.1.S1_at--418--172Chr12:258684..258708 (25 bp)
ATTTTGCATGTACACTTTGCCGTAG
LOC_Os12g01390
Os.5886.1.S1_at--469--8252Chr12:258720..258744 (25 bp)
GGCAGCCATAAACAGGAACACCATT
LOC_Os12g01390
Os.5886.1.S1_at--408--8172Chr12:258734..258758 (25 bp)
GGAACACCATTGTCTGTATGTTACT
LOC_Os12g01390
Os.5886.1.S1_at--402--6912Chr12:258749..258773 (25 bp)
GTATGTTACTTGTTTACGGTCTCAT
LOC_Os12g01390
Os.5886.1.S1_at--362--1933Chr12:258764..258788 (25 bp)
ACGGTCTCATGTCCAGCTGTTTGAA
LOC_Os12g01390
Target Sequence 
ATGGGTCCTGGACCTATGCCAGCATATGGGATGCCTCCAATGGGAAGCTACTGAGTTATCATCCACTTGTGAAGAGTTCA
TTTAGATAAGAATTTCAATTTACACAGAAGAGGAGGCATCTTTCAAGTTGTAGATGTGCTATTATTGGTTGTTTAAACTG
ATTCTTTTGGTACCAGGACAATTTTGGCGAGTGAAATCTCTAGCCAGGTCGAGTTAATTGCTGGTTGCTATATATATTAT
NTTACGATGGGATAGGATGAGGGATGGTTGTTAGGTTGAGCGGGAGCTGCAAAGGCTGGTACCATTATTTGTATAGGTTG
TGTGATAAAAAAGCTTGTAGACATTTTGCATGTACACTTTGCCGTAGTGGTTGGCGTTGGCAGCCATAAACAGGAACACC
ATTGTCTGTATGTTACTTGTTTACGGTCTCATGTCCAGCTGTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis