Browse Element(s) Details


Os.9537.1.S1_s_at

Description gb:AK067673.1
DB_XREF= gi:32977691
TID=Os.9537.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116N21, full insert sequence.
FL= gb:AK067673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0142011/11ribosomal protein L10 containing protein, expressed
LOC_Os12g014305/11ribosomal protein L10 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01370OsAffx.18618.1.S1_at10/1111+226459..230596expressed protein
LOC_Os11g01370Os.8201.1.S1_x_at4/1111+226459..230596expressed protein
LOC_Os11g01380OsAffx.18617.1.S1_at11/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01380Os.5886.1.S1_at8/1111+233285..243450Clathrin heavy chain, putative, expressed
LOC_Os11g01390OsAffx.19445.1.S1_at11/1111+244190..244639EF hand family protein
LOC_Os11g01400OsAffx.31538.2.S1_x_at11/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.31538.2.S1_at10/1111+246082..249718hypothetical protein
LOC_Os11g01400OsAffx.21149.1.S1_x_at1/1111+246082..249718hypothetical protein
LOC_Os11g01410OsAffx.31539.2.S1_at11/1111+249808..250788Ammonium transporter 2, putative
LOC_Os11g01420Os.9537.1.S1_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.9537.1.S1_s_at11/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01420Os.24578.1.A1_at1/1111+251429..253891ribosomal protein L10 containing protein, expressed
LOC_Os11g01430OsAffx.18620.1.S1_at11/1111+254163..255783hypothetical protein
LOC_Os11g01430Os.23748.1.A1_at6/1111+254163..255783hypothetical protein
LOC_Os11g01450NANA11+261625..263495phosphatidate cytidylyltransferase family protein, expressed
LOC_Os11g01460Os.52782.1.S1_at1/1111+268028..270933hypothetical protein
LOC_Os11g01470NANA11+271765..279565retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9537.1.S1_s_at--405--2972Chr12:267475..267499 (25 bp)
AATGGAACCCTTTCTACGCAAGCAA
LOC_Os12g01430
Os.9537.1.S1_s_at--1034--5312Chr12:267304..267328 (25 bp)
GAAGGGAAGCCCATTTCACCAGAAG
LOC_Os12g01430
Os.9537.1.S1_s_at--672--2392Chr12:267063..267297 (25 bp)
AAACTCTGCGGTTGCTTGGGATGCA
LOC_Os12g01430
Os.9537.1.S1_s_at--797--1312Chr12:267039..267063 (25 bp)
AGATGGCAACATTCCGACTGTACCT
LOC_Os12g01430
Os.9537.1.S1_s_at--350--3212Chr12:266978..267002 (25 bp)
CAAGGAAGGCTTGGCGCAACTGCGA
LOC_Os12g01430
Os.9537.1.S1_s_at--709--10492Chr12:266933..266957 (25 bp)
TTAAGCTTGTTTGGCTTGCACACCC
NONE
Os.9537.1.S1_s_at--319--2172Chr12:266914..266938 (25 bp)
ACACCCAGTTTGCAGTGACGCACTT
NONE
Os.9537.1.S1_s_at--279--2072Chr12:266893..266917 (25 bp)
ACTTGCTGTCTTGTTGTGCTGAGGC
NONE
Os.9537.1.S1_s_at--381--3452Chr12:266869..266893 (25 bp)
CAGTTTTTGGTATTGTGCGTGCGCA
NONE
Os.9537.1.S1_s_at--541--8692Chr12:266786..266810 (25 bp)
TGTGCTCTTGGTACGTTGGAAATCT
NONE
Os.9537.1.S1_s_at--209--7412Chr12:266738..266762 (25 bp)
GTGTTCGTTGTCCTAGTATTTTCTA
NONE
Target Sequence 
AATGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAGGGNCGGTGGAATTAGTTGCAGATCACATAG
TATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCGA
CTGTACCTTGTCTGCCGGTGGTCCTCTGATGACTTTGAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGA
TGATTCTTCTTAAGCTTGTTTGGCTTGCACACCCAGTTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTT
TGGTATTGTGCGTGCGCATGGCGTTTGTGCTCTTGGTACGTTGGAAATCTGAAAAATGTAATATGTTAACAGGGTGTTCG
TTGTCCTAGTATTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9537.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis