Browse Element(s) Details


Os.7309.1.S1_at

Description gb:AK107459.1
DB_XREF= gi:32992668
TID=Os.7309.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-A02, full insert sequence.
FL= gb:AK107459.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0136011/11expressed protein
LOC_Os11g013303/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01350OsAffx.30764.2.S1_at11/1112+203476..206189csAtPR5, putative, expressed
LOC_Os12g01360Os.7309.1.S1_at11/1112+219457..224793expressed protein
LOC_Os12g01360Os.7309.2.S1_at10/1112+219457..224793expressed protein
LOC_Os12g01370Os.152.1.S1_at11/1112+225239..229184Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os12g01380Os.8201.1.S1_at11/1112+241968..246389expressed protein
LOC_Os12g01380Os.8201.1.S1_x_at11/1112+241968..246389expressed protein
LOC_Os12g01380OsAffx.18618.1.S1_at10/1112+241968..246389expressed protein
LOC_Os12g01390Os.5886.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01390OsAffx.18617.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7309.1.S1_at--556--6691Chr12:221264..221288 (25 bp)
GTTCTAAGTTCCATGTTACTCCTGT
LOC_Os12g01360
Os.7309.1.S1_at--747--6771Chr12:221278..221302 (25 bp)
GTTACTCCTGTTATGTTCTATGTTC
LOC_Os12g01360
Os.7309.1.S1_at--667--8791Chr12:221298..221322 (25 bp)
TGTTCAGTCCTGTTAGGTGCGACAA
LOC_Os12g01360
Os.7309.1.S1_at--925--1231Chr12:221324..221348 (25 bp)
AGTTGCTGGATATTTTCTCTTCTCG
LOC_Os12g01360
Os.7309.1.S1_at--1132--9491Chr12:221339..221363 (25 bp)
TCTCTTCTCGGAAGTGGGTTCCAAT
LOC_Os12g01360
Os.7309.1.S1_at--531--211Chr12:221362..221386 (25 bp)
ATTTGTTGTCATCAGAACCTTCCAG
LOC_Os12g01360
Os.7309.1.S1_at--233--5851Chr12:221386..221410 (25 bp)
GACCAACTTCCTTTTAGATGCTCTG
LOC_Os12g01360
Os.7309.1.S1_at--954--1292Chr12:221401..221425 (25 bp)
AGATGCTCTGCTGTTAGTCACTACC
LOC_Os12g01360
Os.7309.1.S1_at--302--352Chr12:221497..221521 (25 bp)
ATAAGCCTTTTCTCTGTAGTCCTAT
LOC_Os12g01360
Os.7309.1.S1_at--771--2432Chr12:221691..221715 (25 bp)
AAAAGAGTGGTGCTTCTGCTGCAGC
LOC_Os12g01360
Os.7309.1.S1_at--890--5051Chr12:221711..221735 (25 bp)
GCAGCACATCTGTTCTTTACTGTTG
LOC_Os12g01360
Target Sequence 
GTTCTAAGTTCCATGTTACTCCTGTTATGTTCTATGTTCAGTCCTGTTAGGTGCGACAAGAGTTGCTGGATATTTTCTCT
TCTCGGAAGTGGGTTCCAATTTGTTGTCATCAGAACCTTCCAGACCAACTTCCTTTTAGATGCTCTGCTGTTAGTCACTA
CCTGTGTTATTTACTGATTTCTCAGCTCTTTTTTATTTTTTGCCTTTAGGATATTTAATGGGATTTTCTTCTTATAAGCC
TTTTCTCTGTAGTCCTATTCTTGTAATATTTTGGATTTTATTACTACATATGTGTGGCCATGAAGGAGAGGTTCTATAGC
CAGTGCAGAATCCATATAATGCACATTTCAAACTGCTTGATAAAGAGAGACTAAAGTGTAAAAGTAAAATAATATGGCTT
GTGCACTAAGAGATGCAATTTCATGGTAAAAGAGTGGTGCTTCTGCTGCAGCACATCTGTTCTTTACTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis