Browse Element(s) Details


Os.152.1.S1_at

Description gb:AK071185.1
DB_XREF= gi:32981208
TID=Os.152.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for w-3 fatty acid desaturase, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083P12, full insert sequence.
FL= gb:AK071185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0137011/11Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os11g0134011/11Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01350OsAffx.30764.2.S1_at11/1112+203476..206189csAtPR5, putative, expressed
LOC_Os12g01360Os.7309.1.S1_at11/1112+219457..224793expressed protein
LOC_Os12g01360Os.7309.2.S1_at10/1112+219457..224793expressed protein
LOC_Os12g01370Os.152.1.S1_at11/1112+225239..229184Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os12g01380Os.8201.1.S1_at11/1112+241968..246389expressed protein
LOC_Os12g01380Os.8201.1.S1_x_at11/1112+241968..246389expressed protein
LOC_Os12g01380OsAffx.18618.1.S1_at10/1112+241968..246389expressed protein
LOC_Os12g01390Os.5886.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01390OsAffx.18617.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0006636biological_processfatty acid desaturation
GO:0009266biological_processresponse to temperature stimulus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0016720molecular_functiondelta12-fatty acid dehydrogenase activity
GO:0042389molecular_functionomega-3 fatty acid desaturase activity
GO:0045485molecular_functionomega-6 fatty acid desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.152.1.S1_at--385--3372Chr12:225777..225801 (25 bp)
CACCTGTTTGGCGTTCTGCTGAGGA
LOC_Os12g01370
Os.152.1.S1_at--746--10772Chr12:225743..225767 (25 bp)
TTGATCACTTTGTCAGCGACGTCGG
LOC_Os12g01370
Os.152.1.S1_at--249--6452Chr12:225696..225720 (25 bp)
GATCACAGCTTGAACGGCACTGACT
LOC_Os12g01370
Os.152.1.S1_at--841--5732Chr12:225675..225699 (25 bp)
GACTGGGCCGAAGATGCTAAGCACA
LOC_Os12g01370
Os.152.1.S1_at--905--8032Chr12:225624..225648 (25 bp)
GGAGTCACCGTGTACTAGTAGCTTA
LOC_Os12g01370
Os.152.1.S1_at--959--5172Chr12:225516..225540 (25 bp)
GCAAGGGCTACTTACCTGCTCAAAA
LOC_Os12g01370
Os.152.1.S1_at--248--9072Chr12:225500..225524 (25 bp)
TGCTCAAAAGCATGCGGCCCTGCAG
LOC_Os12g01370
Os.152.1.S1_at--422--1552Chr12:225424..225448 (25 bp)
AGCATTGTCCAATTGTTGTTGTAGC
LOC_Os12g01370
Os.152.1.S1_at--352--10792Chr12:225409..225433 (25 bp)
TTGTTGTAGCTAGCGGGTCGTTCAG
LOC_Os12g01370
Os.152.1.S1_at--856--5552Chr12:225370..225394 (25 bp)
GAAAGTGTCCAAGTTATACCGTGTA
LOC_Os12g01370
Os.152.1.S1_at--819--8852Chr12:225280..225304 (25 bp)
TGATCCGAATTAAGCTCTGCACCTT
LOC_Os12g01370
Target Sequence 
CACCTGTTTGGCGTTCTGCTGAGGAGCTTGAGAGTTGATCACTTTGTCAGCGACGTCGGGGATGTTGTTTACTACCAAAC
AGATCACAGCTTGAACGGCACTGACTGGGCCGAAGATGCTAAGCACANAGTGAAAAATTAACTTGAAAATTATTGGAGTC
ACCGTGTACTAGTAGCTTAGTAAGNGAAGAATGGATTNTTTTCCTGATAGATAGCATATCCATCATAGCATGAACTGCTG
AAAGAAAGAGAAATAATAAGCAGCAAGGGCTACTTACCTGCTCAAAAGCATGCGGCCCTGCAGAACACAGGGATTCATTG
ATCTGTTGGATCACCATATTCAGATCACTAAACAAGCATTGTCCAATTGTTGTTGTAGCTAGCGGGTCGTTCAGTTTTGA
NTAGTTCTGAAAGTGTCCAAGTTATACCGTGTAACCCTTTGGAGTTNGCCAGGCAATTCAATGTCTGGAGTTTGTATGNG
CCATTGAGCAGACAATTATGATCCGAATTAAGCTCTGCACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis