Browse Element(s) Details


OsAffx.7454.1.S1_at

Description tigr:9640.m00043
TID=OsAffx.7454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L10, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g014302/11ribosomal protein L10 containing protein
LOC_Os03g155001/11retrotransposon protein, putative, unclassified
LOC_Os11g033801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01380Os.8201.1.S1_at11/1112+241968..246389expressed protein
LOC_Os12g01380Os.8201.1.S1_x_at11/1112+241968..246389expressed protein
LOC_Os12g01380OsAffx.18618.1.S1_at10/1112+241968..246389expressed protein
LOC_Os12g01390Os.5886.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01390OsAffx.18617.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01400OsAffx.19445.1.S1_at11/1112+259581..260030EF hand family protein
LOC_Os12g01410OsAffx.31538.1.S1_at11/1112+262452..264165hypothetical protein
LOC_Os12g01420OsAffx.31539.1.S1_at11/1112+264610..265986Ammonium Transporter family protein
LOC_Os12g01430Os.9537.1.S1_s_at5/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.7454.1.S1_at2/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.53113.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.24713.1.S1_x_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.24578.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01449Os.11394.1.S1_at11/1112+272634..281070expressed protein
LOC_Os12g01449OsAffx.28164.2.S1_at1/1112+272634..281070expressed protein
LOC_Os12g01449Os.46481.2.S1_x_at1/1112+272634..281070expressed protein
LOC_Os12g01470NANA12+282777..287007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01480Os.55958.1.S1_at10/1112+288717..290513phosphatidate cytidylyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7454.1.S1_at--73--9411Chr12:267356..267463 (25 bp)
TCGTCTGAACAAAGGTGCGGTAGAA
LOC_Os12g01430
OsAffx.7454.1.S1_at--863--1031Chr12:267344..267368 (25 bp)
AGGTGCGGTAGAATTAGTTGCAGAT
LOC_Os12g01430
OsAffx.7454.1.S1_at--185--4591Chr12:266849..266873 (25 bp)
GCGCATGGCGTCTGTGCTCTTTTTT
NONE
OsAffx.7454.1.S1_at--1036--8673Chr04:18217451..18217599 (25 bp)
TGTGCTCTTTTTTGCCGGAATGACC
NONE
OsAffx.7454.1.S1_at--723--7313Chr04:18217580..18217600 (21 bp)
GTGCTCTTTTTTGCCGGAATGACCG
NONE
OsAffx.7454.1.S1_at--951--95511Chr10:14102307..14102326 (20 bp)
TCTTTTTTGCCGGAATGACCGAAGG
NONE
OsAffx.7454.1.S1_at--366--992Chr03:15486537..15486556 (20 bp)
AGGAGGTCATTCAATGTAAGCGTCT
NONE
OsAffx.7454.1.S1_at--745--7131Chr12:266805..266829 (25 bp)
GTCATTCAATGTAAGCGTCTGTGCT
NONE
OsAffx.7454.1.S1_at--235--10511Chr12:266801..266825 (25 bp)
TTCAATGTAAGCGTCTGTGCTCTTG
NONE
OsAffx.7454.1.S1_at--870--751Chr12:266797..266821 (25 bp)
ATGTAAGCGTCTGTGCTCTTGGTAC
NONE
OsAffx.7454.1.S1_at--57--8751Chr12:266796..266820 (25 bp)
TGTAAGCGTCTGTGCTCTTGGTACG
NONE
Target Sequence 
TCGTCTGAACAAAGGTGCGGTAGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAG
CACAAACTCTGCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGTGGTCCTCTGATGACTTC
GAAGTTTACAAGGAAGGCTTGGCGCAACTGCGAGCTGAAGCTGATGATTCTTCTTAAGCTTGTTTGGCTTGCACACCCAG
TTTGCAGTGACGCACTTGCTGTCTTGTTGTGCTGAGGCAGTTTTTGGTATTGTGCGTGCGCATGGCGTCTGTGCTCTTTT
TTGCCGGAATGACCGAAGGAGGTCATTCAATGTAAGCGTCTGTGCTCTTGGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis