Browse Element(s) Details


Os.55958.1.S1_at

Description gb:AK109049.1
DB_XREF= gi:32994258
TID=Os.55958.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E02, full insert sequence.
FL= gb:AK109049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0148010/11phosphatidate cytidylyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01410OsAffx.31538.1.S1_at11/1112+262452..264165hypothetical protein
LOC_Os12g01420OsAffx.31539.1.S1_at11/1112+264610..265986Ammonium Transporter family protein
LOC_Os12g01430Os.9537.1.S1_s_at5/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.7454.1.S1_at2/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.53113.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.24713.1.S1_x_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.24578.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01449Os.11394.1.S1_at11/1112+272634..281070expressed protein
LOC_Os12g01449OsAffx.28164.2.S1_at1/1112+272634..281070expressed protein
LOC_Os12g01449Os.46481.2.S1_x_at1/1112+272634..281070expressed protein
LOC_Os12g01470NANA12+282777..287007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01480Os.55958.1.S1_at10/1112+288717..290513phosphatidate cytidylyltransferase family protein, expressed
LOC_Os12g01490Os.18448.1.S1_s_at11/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490Os.18448.1.S1_at10/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490OsAffx.30765.1.S1_at2/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01500Os.28272.1.S1_at11/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.1.S1_x_at10/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.2.S1_at7/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01510Os.17304.1.S1_at10/1112+305276..309206protein kinase family protein, putative, expressed
LOC_Os12g01520Os.5283.1.S1_at6/1112+312152..317504Ubiquitin-activating enzyme E1 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008654biological_processphospholipid biosynthesis
GO:0016020cellular_componentmembrane
GO:0004605molecular_functionphosphatidate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55958.1.S1_at--298--8271Chr12:289353..289377 (25 bp)
GGCAGTTAGGCCGTATAAAGCTTCC
LOC_Os12g01480
Os.55958.1.S1_at--790--8091Chr12:289133..289157 (25 bp)
GGACCATGGTGATTGCCTTTGGCGT
LOC_Os12g01480
Os.55958.1.S1_at--27--4811Chr12:289078..289464 (25 bp)
GCTCTCTATCAGCACACGCTTGGAC
LOC_Os12g01480
Os.55958.1.S1_at--349--6751Chr12:288939..288963 (25 bp)
GTTCAGAATCAGATGTTCTTGGGCA
LOC_Os12g01480
Os.55958.1.S1_at--516--5011Chr12:288917..288941 (25 bp)
GCAGGTTCTAGTGAGTAGCCGCCTT
LOC_Os12g01480
Os.55958.1.S1_at--521--6971Chr12:288903..288927 (25 bp)
GTAGCCGCCTTGCAGAGCTCAAAAA
LOC_Os12g01480
Os.55958.1.S1_at--1122--5691Chr12:288889..288913 (25 bp)
GAGCTCAAAAACAACCGACTTACTA
LOC_Os12g01480
Os.55958.1.S1_at--49--2471Chr12:288843..288867 (25 bp)
AACAACGATGGATACAGGCTGCAAG
LOC_Os12g01480
Os.55958.1.S1_at--798--1191Chr12:288774..288798 (25 bp)
AGTATCTGACTGTCTGATATTAGTA
LOC_Os12g01480
Os.55958.1.S1_at--58--8171Chr12:288731..288755 (25 bp)
GGAAAAACACACCAGATAGCAATCT
LOC_Os12g01480
Os.55958.1.S1_at--1116--6451Chr12:288717..288741 (25 bp)
GATAGCAATCTTCACTTTCAGGTCC
NONE
Target Sequence 
GGCAGTTAGGCCGTATAAAGCTTCCTTANAANCCTGACAAATCTTANGCTGGATCCATTGCAATGTTCTTAGNTGGTTTC
CTTGCATCAATCCTGTACATGTGCTACTTCCACCTCTTCGGATTTGTCGAGGAGAGCTGGACCATGGTGATTGCCTTTGG
CGTGACATCGCTTTCTGCTGCAATTGTGGAGTCGCTCTCTATCAGCACACGCTTGGACGACAATCTGACTGTGCCACTCG
CCTCTGTCCTCATTGGTGTCCTTGTTTTCTATTATATTGGGGCCAGAAACCTGTGCTGCATGAGCGCTGACAGCAGCGAT
ATTTCTGCACTTGTTCAGAATCAGATGTTCTTGGGCAGGTTCTAGTGAGTAGCCGCCTTGCAGAGCTCAAAAACAACCGA
CTTACTAAAATCAGATTCGATTAGATGTAACAACGATGGATACAGGCTGCAAGAATCATAATTTTGTGATTGTATCTTGT
GATCAAGGAAAACAAAAAGTATCTGACTGTCTGATATTAGTAAAGCAAAACTCGAGGAGAGGAAAAACACACCAGATAGC
AATCTTCACTTTCAGGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis