Browse Element(s) Details


Os.18448.1.S1_s_at

Description gb:AK107297.1
DB_XREF= gi:32992506
TID=Os.18448.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C05, full insert sequence.
FL= gb:AK107297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0148011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g0149011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01430OsAffx.18620.1.S1_at11/1111+254163..255783hypothetical protein
LOC_Os11g01430Os.23748.1.A1_at6/1111+254163..255783hypothetical protein
LOC_Os11g01450NANA11+261625..263495phosphatidate cytidylyltransferase family protein, expressed
LOC_Os11g01460Os.52782.1.S1_at1/1111+268028..270933hypothetical protein
LOC_Os11g01470NANA11+271765..279565retrotransposon protein, putative, unclassified
LOC_Os11g01480Os.18448.1.S1_s_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01480OsAffx.30765.1.S1_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01490Os.28272.2.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_x_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01500NANA11+290960..291905hypothetical protein
LOC_Os11g01510Os.5283.1.S1_at11/1111+294669..300588Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os11g01520NANA11+301445..301804hypothetical protein
LOC_Os11g01530OsAffx.30767.1.S1_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.4.S1_s_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.3.S1_x_at1/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01540OsAffx.31540.2.S1_s_at11/1111+307804..309616expressed protein
LOC_Os11g01540OsAffx.31540.2.S1_at10/1111+307804..309616expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18448.1.S1_s_at--1111--5032Chr12:296005..296029 (25 bp)
GCAGAGAGTTGTGCTACTGGGCTCT
LOC_Os12g01490
Os.18448.1.S1_s_at--401--1252Chr12:295999..296023 (25 bp)
AGTTGTGCTACTGGGCTCTCTCTTT
LOC_Os12g01490
Os.18448.1.S1_s_at--278--3772Chr12:295982..296006 (25 bp)
CTCTCTTTCTTTGTTCTGATCATGT
LOC_Os12g01490
Os.18448.1.S1_s_at--838--10312Chr12:295977..296001 (25 bp)
TTTCTTTGTTCTGATCATGTCTCCC
LOC_Os12g01490
Os.18448.1.S1_s_at--899--9472Chr12:295968..295992 (25 bp)
TCTGATCATGTCTCCCCTGTTGAAA
LOC_Os12g01490
Os.18448.1.S1_s_at--750--3512Chr12:295962..295986 (25 bp)
CATGTCTCCCCTGTTGAAAGATGCA
LOC_Os12g01490
Os.18448.1.S1_s_at--592--3472Chr12:295803..295827 (25 bp)
CAGGGACAAGTACTCTTCATCTCAC
LOC_Os12g01490
Os.18448.1.S1_s_at--70--2852Chr12:295796..295820 (25 bp)
AAGTACTCTTCATCTCACCATATGA
LOC_Os12g01490
Os.18448.1.S1_s_at--167--4332Chr12:295779..295803 (25 bp)
CCATATGACTACACTGTGGTGATAT
LOC_Os12g01490
Os.18448.1.S1_s_at--861--8592Chr12:295763..295787 (25 bp)
TGGTGATATTTTGTGGTACTTGTCC
LOC_Os12g01490
Os.18448.1.S1_s_at--794--6512Chr12:295759..295783 (25 bp)
GATATTTTGTGGTACTTGTCCTTTT
LOC_Os12g01490
Target Sequence 
GCAGAGAGTTGTGCTACTGGGCTCTCTCTTTCTTTGTTCTGATCATGTCTCCCCTGTTGAAAGATGCANCATNANNAGTC
CTACCANTACTATATTGCTGTGCTGTACTGGTCTGGTCCCTGGTGATATATCAGATATCNCTAGCTAGATCATATGTCAT
TGTGGATGATAAATCAAATTAGGAAAGAAGAAAACTCATGCAACAGGGACAAGTACTCTTCATCTCACCATATGACTACA
CTGTGGTGATATTTTGTGGTACTTGTCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18448.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis