Browse Element(s) Details


Os.28272.1.S1_at

Description gb:AK072111.1
DB_XREF= gi:32982134
TID=Os.28272.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119I16, full insert sequence.
FL= gb:AK072111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0150011/11outer membrane protein, OMP85 family protein, expressed
LOC_Os11g0149011/11outer membrane protein, OMP85 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01449Os.11394.1.S1_at11/1112+272634..281070expressed protein
LOC_Os12g01449OsAffx.28164.2.S1_at1/1112+272634..281070expressed protein
LOC_Os12g01449Os.46481.2.S1_x_at1/1112+272634..281070expressed protein
LOC_Os12g01470NANA12+282777..287007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01480Os.55958.1.S1_at10/1112+288717..290513phosphatidate cytidylyltransferase family protein, expressed
LOC_Os12g01490Os.18448.1.S1_s_at11/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490Os.18448.1.S1_at10/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01490OsAffx.30765.1.S1_at2/1112+295660..297850myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os12g01500Os.28272.1.S1_at11/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.1.S1_x_at10/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01500Os.28272.2.S1_at7/1112+301238..304271outer membrane protein, OMP85 family protein, expressed
LOC_Os12g01510Os.17304.1.S1_at10/1112+305276..309206protein kinase family protein, putative, expressed
LOC_Os12g01520Os.5283.1.S1_at6/1112+312152..317504Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os12g01530Os.12096.3.S1_a_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.4.S1_s_at11/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530OsAffx.30767.1.S1_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01530Os.12096.3.S1_x_at9/1112+319400..322923Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g01540OsAffx.31540.1.S1_at11/1112+323731..327238hypothetical protein
LOC_Os12g01540OsAffx.31540.2.S1_s_at10/1112+323731..327238hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28272.1.S1_at--579--192Chr12:301624..301648 (25 bp)
ATTTCGCATAGAGGTTTGTCTTTGA
LOC_Os12g01500
Os.28272.1.S1_at--809--10632Chr12:301622..301646 (25 bp)
TTCGCATAGAGGTTTGTCTTTGACA
LOC_Os12g01500
Os.28272.1.S1_at--92--4132Chr12:301620..301644 (25 bp)
CGCATAGAGGTTTGTCTTTGACATC
LOC_Os12g01500
Os.28272.1.S1_at--571--272Chr12:301617..301641 (25 bp)
ATAGAGGTTTGTCTTTGACATCCCT
LOC_Os12g01500
Os.28272.1.S1_at--347--6152Chr12:301614..301638 (25 bp)
GAGGTTTGTCTTTGACATCCCTCTA
LOC_Os12g01500
Os.28272.1.S1_at--422--1012Chr12:301613..301637 (25 bp)
AGGTTTGTCTTTGACATCCCTCTAA
LOC_Os12g01500
Os.28272.1.S1_at--175--7872Chr12:301612..301636 (25 bp)
GGTTTGTCTTTGACATCCCTCTAAA
LOC_Os12g01500
Os.28272.1.S1_at--171--6872Chr12:301611..301635 (25 bp)
GTTTGTCTTTGACATCCCTCTAAAG
LOC_Os12g01500
Os.28272.1.S1_at--887--2072Chr12:301600..301624 (25 bp)
ACATCCCTCTAAAGTAACTGATGAA
LOC_Os12g01500
Os.28272.1.S1_at--271--8772Chr12:301563..301587 (25 bp)
TGTTACTGAATGAATTTTTTCCCCT
LOC_Os12g01500
Os.28272.1.S1_at--859--10472Chr12:301561..301585 (25 bp)
TTACTGAATGAATTTTTTCCCCTCT
LOC_Os12g01500
Target Sequence 
ATTTCGCATAGAGGTTTGTCTTTGACATCCCTCTAAAGTAACTGATGAAATTGAATTATTTTGTTACTGAATGAATTTTT
TCCCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis