Browse Element(s) Details


Os.28272.1.S1_x_at

Description gb:AK072111.1
DB_XREF= gi:32982134
TID=Os.28272.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119I16, full insert sequence.
FL= gb:AK072111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0149011/11outer membrane protein, OMP85 family protein
LOC_Os12g0150010/11outer membrane protein, OMP85 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01450NANA11+261625..263495phosphatidate cytidylyltransferase family protein, expressed
LOC_Os11g01460Os.52782.1.S1_at1/1111+268028..270933hypothetical protein
LOC_Os11g01470NANA11+271765..279565retrotransposon protein, putative, unclassified
LOC_Os11g01480Os.18448.1.S1_s_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01480OsAffx.30765.1.S1_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01490Os.28272.2.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_x_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01500NANA11+290960..291905hypothetical protein
LOC_Os11g01510Os.5283.1.S1_at11/1111+294669..300588Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os11g01520NANA11+301445..301804hypothetical protein
LOC_Os11g01530OsAffx.30767.1.S1_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.4.S1_s_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.3.S1_x_at1/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01540OsAffx.31540.2.S1_s_at11/1111+307804..309616expressed protein
LOC_Os11g01540OsAffx.31540.2.S1_at10/1111+307804..309616expressed protein
LOC_Os11g01550Os.56072.1.S1_at7/1111+313616..314451LOB domain protein 12, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28272.1.S1_x_at--449--2051Chr11:287125..287149 (25 bp)
ACTTGATCTTCGAGTGGCTTTACCG
LOC_Os11g01490
Os.28272.1.S1_x_at--141--3432Chr12:302000..302024 (25 bp)
CAGAGCAGTTCTACTTGGGTGGCAA
LOC_Os12g01500
Os.28272.1.S1_x_at--166--3112Chr12:301977..302001 (25 bp)
AATAGGTCTCTTATGTGCCGCTTGG
LOC_Os12g01500
Os.28272.1.S1_x_at--750--4932Chr12:301958..301982 (25 bp)
GCTTGGGTGGACCATCATCACTATT
LOC_Os12g01500
Os.28272.1.S1_x_at--771--8972Chr12:301876..301900 (25 bp)
TGAAAATGTTGCTTCCACTTCTCCT
LOC_Os12g01500
Os.28272.1.S1_x_at--849--2052Chr12:301860..301884 (25 bp)
ACTTCTCCTGAGCTAAGTGCACGGG
LOC_Os12g01500
Os.28272.1.S1_x_at--161--5692Chr12:301830..301854 (25 bp)
GACATTGCGGTCACAGCCTTTGCTG
LOC_Os12g01500
Os.28272.1.S1_x_at--436--572Chr12:301761..301785 (25 bp)
ATCCATGGCCATGCATTTGTCTCAG
LOC_Os12g01500
Os.28272.1.S1_x_at--507--3452Chr12:301702..301726 (25 bp)
CAGGAAATTCCCTCTTGCTGAGTTT
LOC_Os12g01500
Os.28272.1.S1_x_at--421--1012Chr12:301613..301637 (25 bp)
AGGTTTGTCTTTGACATCCCTCTAA
LOC_Os12g01500
Os.28272.1.S1_x_at--860--10472Chr12:301561..301585 (25 bp)
TTACTGAATGAATTTTTTCCCCTCT
LOC_Os12g01500
Target Sequence 
ACTTGATCTTCGAGTGGCTTTACCGCTGGGTGTGTTGAATGGCGCCNTTAATGCTGGAGTGGCTGCTGGGATCATCCACC
CATTGGCAAGGGGATCGACGGGCTCTATATCNNCACTTTCAGAGCAGTTCTACTTGGGTGGCAATAGGTCTCTTATGTGC
CGCTTGGGTGGACCATCATCACTATTAGGTTTCAAGAAAAGAGGGCTGGGGACAGACTTGCNAAGCAGTACCCCAGAGAA
TTCTGAAAATGTTGCTTCCACTTCTCCTGAGCTAAGTGCACGGGGAGGTGACATTGCGGTCACAGCCTTTGCTGATCTGT
NCATTTGATATACCTCTGAAGCCNCTCAGGGAGCTGGGAATCCATGGCCATGCATTTGTCTCAGCTGGAAATCTTGCCAA
ACTAACAGAGCCTGATCTCAGGAAATTCCCTCTTGCTGAGTTTCTACAAACATTCAGGAGTTCTGCAGGATTTGGTGTAG
TTGTGCCAACAAGATTATTTCGCATAGAGGTTTGTCTTTGACATCCCTCTAAAGTAACTGATGAAATTGAATTATTTTGT
TACTGAATGAATTTTTTCCCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28272.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis